Protein Alignment Rpt1 and psmc1b

DIOPT Version :9

• Sequence 1: NP_477473.1
• Gene: Rpt1 / 35701
• FlyBaseID: FBgn0028687
• Length: 433
• Species: Drosophila melanogaster
• Sequence 2: NP_001002091.1
• Gene: psmc1b / 415181
• ZFINID: ZDB-GENE-040625-69
• Length: 440
• Species: Danio rerio
• Alignment Length: 439
• Identity: 177/439 - (40%)
• Similarity: 260/439 - (59%)
• Gaps: 44/439 - (10%)

  Fly     1 MPDYLGDDQRKVKHDEKEDK----------EIKSLDEGDIE--LLKTYGQSQYHKSIKSIEEDIQ 53
            :|..:|..:||.|..:...|          .:|.|.:..|:  ||......:..:.:|.:||..:
Zfish    29 IPTRVGKRKRKSKGPDAASKLPLVTPHTQCRLKLLKQDRIKDYLLMEEEFIRNQEQMKPLEEKQE 93

  Fly    54 KAVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQF 118
            :...:|::|.|                          .|:.|....:||    ||...|::....
Zfish    94 EERSKVDDLRG--------------------------TPMSVGTLEEII----DDNHAIVSTSVG 128

  Fly   119 AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQ 183
            ::..|.:...|....:|.|..|.::...:.:...|....||.||:|:||..|..||:|:||...|
Zfish   129 SEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQ 193

  Fly   184 IEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 248
            |::::|.||.||.|||.:..:||:|||||:|:|.|||||||.|:||||:|.|.|:||:||||:||
Zfish   194 IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258

  Fly   249 YVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313
            |:|:|.::|||||.:|......::|.|||||||..|:|..:||:.|:|||||||:|||||||.||
Zfish   259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323

  Fly   314 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCP 378
            ::||:|||||.:||||||:||||:|||:||.|||:..:..||:||...|:|..|:..|.|.....
Zfish   324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVAEDVSLDDLILAKD 388

  Fly   379 NSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIKSYAKFSATP 427
            :.:||:|:::|||||:.|:|.||...|.:||.::.:.|:  |.|...||
Zfish   389 DLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVL--YKKQEGTP 435

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt1	NP_477473.1	RPT1	27..430	CDD:224143	169/403 (42%)
psmc1b	NP_001002091.1	PTZ00361	1..440	CDD:185575	177/439 (40%)
		Prot_ATP_ID_OB	108..>176	CDD:293059	17/71 (24%)
		AAA	222..355	CDD:278434	86/132 (65%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0554
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D298123at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	3.820