DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt1 and Rpt3R

DIOPT Version :9

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_649938.2 Gene:Rpt3R / 41190 FlyBaseID:FBgn0037742 Length:405 Species:Drosophila melanogaster


Alignment Length:422 Identity:167/422 - (39%)
Similarity:236/422 - (55%) Gaps:78/422 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DYLGDDQRKVK----HDEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQKAVKQVNELT 63
            ||:.::||.:|    |.::|.|.||:     :.|:                  |.:.::.|:|..
  Fly    46 DYIKEEQRNLKKEFIHAQEEVKRIKA-----VPLV------------------IGQFLEAVDENN 87

  Fly    64 GIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADS 128
            ||..|.||                .|    ...|....|:.:...|...:.:.:.:..:|||   
  Fly    88 GIVASTTG----------------SN----YYVRVLSTIDREQLKPSSSVGLHKQSNCLVDL--- 129

  Fly   129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVET 193
                                    :||:.|.|::|:..::|||::|||:||...|.:::||.||.
  Fly   130 ------------------------VPPEADSTISMLSPDEKPDISYSDIGGLDIQKQEIREAVEL 170

  Fly   194 PLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVR 258
            ||.|.:.:..:||:||:|||||||||.|||:.|:|||:.|.|.||||:|||.||||:|||.||||
  Fly   171 PLTHAQLYKQIGIDPPRGVLLFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVR 235

  Fly   259 ELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR 323
            :||.:|:.....:||.||||||...|||...|.|.||||.:|||:||:||||...||||:|||||
  Fly   236 DLFRLAKQNSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIMATNR 300

  Fly   324 PDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRF-DLLARLCPNS-TGAEIR 386
            .|||||||:||||||||:|..|||:..:..:|......|:|..|:.. |::||  |:. :.|:|.
  Fly   301 ADTLDPALLRPGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDIIAR--PDKISNADIN 363

  Fly   387 SVCTEAGMFAIRARRKVATEKDFLEAVKKVIK 418
            ::|.||||.|:|..|.|...|||.:..|..::
  Fly   364 AICQEAGMHAVRENRYVVNAKDFEKGYKTSVR 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 RPT1 27..430 CDD:224143 157/394 (40%)
Rpt3RNP_649938.2 PTZ00454 20..405 CDD:240423 167/422 (40%)
AAA 189..322 CDD:278434 89/132 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445432
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23073
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

Return to query results.
Submit another query.