DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and psmc1a

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_956327.1 Gene:psmc1a / 336786 ZFINID:ZDB-GENE-030131-8730 Length:440 Species:Danio rerio


Alignment Length:451 Identity:179/451 - (39%)
Similarity:260/451 - (57%) Gaps:62/451 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DDQRKVKHDE--------KEDKEIKSLDEGD------------IELLKTYGQSQY---------- 41
            ||:.|.|..|        |:.|::|..|...            ::|||......|          
Zfish    17 DDKDKKKKYEPPIPTRVGKKKKKVKGPDAASKLPLVTPHTQCRLKLLKQERIKDYLLMEEEFIRD 81

  Fly    42 HKSIKSIEEDIQKAVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADS 106
            .:.:|.:||..::...:|::|.|                          .|:.|....:||    
Zfish    82 QEQMKPLEEKQEEERSKVDDLRG--------------------------TPMSVGTLEEII---- 116

  Fly   107 DDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPD 171
            ||...|::....::..|.:...|....:|.|..|.::...:.:...|....||.||:|:||..|.
Zfish   117 DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQ 181

  Fly   172 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDAC 236
            .||:|:||...||::::|.||.||.|||.:..:||:|||||:|:|.|||||||.|:||||:|.|.
Zfish   182 ETYADIGGLDSQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT 246

  Fly   237 FIRVIGSELVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLE 301
            |:||:||||:|||:|:|.::|||||.:|......::|.|||||||..|:|..:||:.|:||||||
Zfish   247 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLE 311

  Fly   302 LINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVER 366
            |:|||||||.||::||:|||||.:||||||:||||:|||:||.|||:..:..||:||...|:|..
Zfish   312 LLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVAD 376

  Fly   367 DIRFDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIKSYAKFSATP 427
            |:..|.|.....:.:||:|:::|||||:.|:|.||...|.:||.::.:.|:  |.|...||
Zfish   377 DVTLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVL--YKKQEGTP 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 160/340 (47%)
psmc1aNP_956327.1 PTZ00361 25..440 CDD:185575 175/443 (40%)

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