DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt1 and psmc3

DIOPT Version :9

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:XP_005169019.1 Gene:psmc3 / 321947 ZFINID:ZDB-GENE-030131-666 Length:427 Species:Danio rerio


Alignment Length:449 Identity:176/449 - (39%)
Similarity:255/449 - (56%) Gaps:60/449 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DYLGDDQRKVKHDE------KEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQK------- 54
            |.:|::..|:..:|      ..|.|||.:..   |:|:...:.|..|.  .|:|:.:|       
Zfish    15 DGIGEEVLKMSTEEIVQRTRLLDSEIKIMKS---EVLRVTHELQAMKD--KIKENTEKIKVNKTL 74

  Fly    55 --AVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQV-------ARCTKIINADSDDPK 110
              .|..|.||..:..:|                  |.|....:       .:|..|  ..|....
Zfish    75 PYLVSNVIELLDVDPND------------------QEEDGANIDLDSQRKGKCAVI--KTSTRQT 119

  Fly   111 YIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYS 175
            |.:.|..    :|| |:.:.|.|:     |||:::.|.|...||.:.|..|..|:|:::|...||
Zfish   120 YFLPVIG----LVD-AEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYS 174

  Fly   176 DVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 240
            |:||..:||::|.|.:..|:.|.|||.||||:||||||::|||||||||.|||.|.:|.|.|:::
Zfish   175 DIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKL 239

  Fly   241 IGSELVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQ 305
            .|.:|||.::|:||::||:.|.:|:.|...:||.||:||||..|||....||.|||||||||:||
Zfish   240 AGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 304

  Fly   306 LDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRF 370
            ||||.|...:||:.||||.|.|||||:|.||||||:||.:|:::.|:.|.:||:|.|:|..|:.|
Zfish   305 LDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVCPDVNF 369

  Fly   371 DLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIKSYAKFSATPRY 429
            :.|||...:..||:.::||.||||.|:|........:|::|.:.:|   .||..|..:|
Zfish   370 EELARCTDDFNGAQCKAVCVEAGMIALRRGATELNHEDYMEGILEV---QAKKKANLQY 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 RPT1 27..430 CDD:224143 168/419 (40%)
psmc3XP_005169019.1 RPT1 12..420 CDD:224143 174/442 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.