DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and Atad2b

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_001349278.1 Gene:Atad2b / 320817 MGIID:2444798 Length:1457 Species:Mus musculus


Alignment Length:442 Identity:141/442 - (31%)
Similarity:214/442 - (48%) Gaps:78/442 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 DEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQKAVKQVNELTGIKESDTGLAPP---- 75
            :|:|.:|    ::||||:.:..|:          |.|....::|      .|..|...|||    
Mouse   258 EEEESQE----EDGDIEVEEAEGE----------ENDRPYNLRQ------RKTVDRYQAPPIVPA 302

  Fly    76 -------ALWDL----AADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSV 129
                   .|:|:    |....|.:.:..:..:..|     .||:.::   .::.:|.:....:..
Mouse   303 HQKKRENTLFDIHRSPARRSHIRRKKHAIHSSDTT-----SSDEERF---ERRKSKSMARARNRC 359

  Fly   130 APTDIE-EGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVET 193
            .|.:.. |.:..|:.|.:.::...| ..:||    |.: || .|.:..:||....|..|:|:|..
Mouse   360 LPMNFRAEDLASGILRERVKVGASL-ADVDP----MNI-DK-SVRFDSIGGLSHHIHALKEMVVF 417

  Fly   194 PLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTD------ACFIRVIGSELVQKYVGE 252
            |||:||.|....|:||:|.|.:|||||||||.|||:||...      |.|:|. |::.:.|:|||
Mouse   418 PLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKKVAFFMRK-GADCLSKWVGE 481

  Fly   253 GARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV 317
            ..|.:|.||:.|...:..:|||||||.:...|........:.:..|:|.|   :||.|.||.|.|
Mouse   482 SERQLRLLFDQAYLMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLAL---MDGLDNRGEIVV 543

  Fly   318 LMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVE-RDIRFDLLARLCPNST 381
            :.||||.|::||||.||||.||:..|.||||..|.||.:||.|..:.: .|.....||..|....
Mouse   544 IGATNRLDSIDPALRRPGRFDREFLFNLPDQRARKHILQIHTRDWNPKLSDAFLGELAEKCVGYC 608

  Fly   382 GAEIRSVCTEAGMFAIRARRK----------------VATEKDFLEAVKKVI 417
            ||:|:::||||.:.|:|.|..                |.:..||..|::.::
Mouse   609 GADIKALCTEAALTALRRRYPQIYASSHKLQLDVTSIVLSAHDFYHAMQNIV 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 121/354 (34%)
Atad2bNP_001349278.1 RecA-like_Yta7-like 400..569 CDD:410925 77/172 (45%)
AAA_lid_3 594..634 CDD:465537 14/39 (36%)
P-loop containing Nucleoside Triphosphate Hydrolases 758..894 CDD:476819
COG5076 840..>1085 CDD:227408
Bromo_AAA 959..1070 CDD:99957
Blue background indicates that the domain is not in the aligned region.

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