Protein Alignment Rpt1 and Atad2

DIOPT Version :10

• Sequence 1: NP_477473.1
• Gene: Rpt1 / 35701
• FlyBaseID: FBgn0028687
• Length: 433
• Species: Drosophila melanogaster
• Sequence 2: NP_001128351.1
• Gene: Atad2 / 314993
• RGDID: 1304849
• Length: 1373
• Species: Rattus norvegicus
• Alignment Length: 310
• Identity: 121/310 - (39%)
• Similarity: 173/310 - (55%)
• Gaps: 34/310 - (10%)

  Fly   141 GVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLG 205
            |:.:::.:|...| ..:||    ||::.  .|.:..|||....|..|:|:|..|||:||.|....
  Rat   384 GIYKDRMKIGANL-ADVDP----MQLDS--SVRFDSVGGLSSHIAALKEMVLFPLLYPEVFEKFK 441

  Fly   206 IEPPKGVLLFGPPGTGKTLCARAVAN---RTD---ACFIRVIGSELVQKYVGEGARMVRELFEMA 264
            |:||:|.|.:|||||||||.|||:||   |.|   |.|:|. |::.:.|:|||..|.:|.||:.|
  Rat   442 IQPPRGCLFYGPPGTGKTLVARALANECSRGDKRVAFFMRK-GADCLSKWVGESERQLRLLFDQA 505

  Fly   265 RSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 329
            ...:..:|||||||.:...|........:.:..|:|.|   :||.|.||.|.|:.||||.|::||
  Rat   506 YQMRPAIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLAL---MDGLDSRGEIVVIGATNRLDSIDP 567

  Fly   330 ALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVER-DIRFDLLARLCPNSTGAEIRSVCTEAG 393
            ||.||||.||:..|.|||:|.|..|.|||.|..:.:. |:..:.||..|....||:|:|:|.||.
  Rat   568 ALRRPGRFDREFLFSLPDKDARKEILKIHTRDWNPKPVDMFLEELAENCVGYCGADIKSICAEAA 632

  Fly   394 MFAIRAR--------RKVATE--------KDFLEAVKKVIKSYAKFSATP 427
            :.|:|.|        .|:..:        |||..|::|:|.:..:...:|
  Rat   633 LCALRRRYPQIYTTSEKLQLDLSSINISAKDFETAMQKIIPASQRAVTSP 682

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt1	NP_477473.1	PRK03992	88..430	CDD:179699	121/310 (39%)
Atad2	NP_001128351.1	RecA-like_Yta7-like	412..581	CDD:410925	80/172 (47%)
		AAA_lid_3	609..643	CDD:465537	13/33 (39%)
		ycf46	<778..919	CDD:177094
		Bromo_AAA	972..1082	CDD:99957