DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and Psmc3

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_113783.2 Gene:Psmc3 / 29677 RGDID:61905 Length:442 Species:Rattus norvegicus


Alignment Length:442 Identity:177/442 - (40%)
Similarity:259/442 - (58%) Gaps:46/442 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DYLGDDQRKVKHDE------KEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQK------- 54
            |.:|::..|:..:|      ..|.|||.:..   |:|:...:.|..|.  .|:|:.:|       
  Rat    30 DGIGEEVLKMSTEEIVQRTRLLDSEIKIMKS---EVLRVTHELQAMKD--KIKENSEKIKVNKTL 89

  Fly    55 --AVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQ 117
              .|..|.||..:..:|.. ...|..||.:.::          .:|..|  ..|....|.:.|..
  Rat    90 PYLVSNVIELLDVDPNDQE-EDGANIDLDSQRK----------GKCAVI--KTSTRQTYFLPVIG 141

  Fly   118 FAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKE 182
                :|| |:.:.|.|:     |||:::.|.|...||.:.|..|..|:|:::|...|||:||..:
  Rat   142 ----LVD-AEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDK 196

  Fly   183 QIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 247
            ||::|.|.:..|:.|.|||.||||:||||||::|||||||||.|||.|.:|.|.|:::.|.:|||
  Rat   197 QIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQ 261

  Fly   248 KYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR 312
            .::|:||::||:.|.:|:.|...:||.||:||||..|||....||.|||||||||:||||||.|.
  Rat   262 MFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPN 326

  Fly   313 GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLC 377
            ..:||:.||||.|.|||||:|.||||||:||.:|:::.|:.|.:||:|.|:|..|:.::.|||..
  Rat   327 TQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCT 391

  Fly   378 PNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIKSYAKFSATPRY 429
            .:..||:.::||.||||.|:|......|.:|::|.:.:|   .||..|..:|
  Rat   392 DDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEV---QAKKKANLQY 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 154/342 (45%)
Psmc3NP_113783.2 PRK03992 42..435 CDD:179699 172/423 (41%)

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