Protein Alignment Rpt1 and Katna1

DIOPT Version :10

• Sequence 1: NP_477473.1
• Gene: Rpt1 / 35701
• FlyBaseID: FBgn0028687
• Length: 433
• Species: Drosophila melanogaster
• Sequence 2: NP_001004217.2
• Gene: Katna1 / 292464
• RGDID: 1303062
• Length: 493
• Species: Rattus norvegicus
• Alignment Length: 456
• Identity: 135/456 - (29%)
• Similarity: 202/456 - (44%)
• Gaps: 76/456 - (16%)

  Fly    27 EGDIELLKTY----GQSQYHKSIKSIEEDIQKAVKQVNEL-----------TGIKESDTGL--AP 74
            :|.::.:..|    ..:..|:..:.:.::|....|.|.|:           |.:|.:...|  :.
  Rat    32 QGVLDQINKYLYSVKDTHLHQKWQQVWQEINVEAKHVKEIMKTLESFKLDSTSLKAAQHELPSSE 96

  Fly    75 PALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIIN-----VK----QFAKFVVDLADSVA 130
            ..:|.|....:    .:||...|  |..:....|||...|     |:    .......|...:|.
  Rat    97 GEVWSLPVPVE----RRPLPGPR--KRQSTQHSDPKPHSNRPGAVVRAHRPSAQSLHSDRGKAVR 155

  Fly   131 PTDIEEGMRVGVDRNKYQIHIPLPP--KIDPT------VTMMQ---VEDKPDVTYSDVGGCKEQI 184
            ..:.:|..:...::||....:..|.  |.|.|      |..::   :...|:|.:.|:....|..
  Rat   156 SREKKEQSKGREEKNKLPAAVTEPEANKFDSTGYDKDLVEALERDIISQNPNVRWYDIADLVEAK 220

  Fly   185 EKLREVVETPLLHPEKFVNLGIEPP-KGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 248
            :.|:|.|..|:..||.|  .||..| ||||:.|||||||||.|:|||......|..|..|.|..|
  Rat   221 KLLQEAVVLPMWMPEFF--KGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSK 283

  Fly   249 YVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEV-QRTMLELINQLDGF--- 309
            |.||..::||.||||||......||.||||:|...|   |...::|. :|...||:.|:||.
  Rat   284 YRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGA 345

  Fly   310 ----DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRF 370
                ||...:.||.|||.|..:|.||.|  ||::::...||...||..:.:|..|.:.:..|:..
  Rat   346 SENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVNL 408

  Fly   371 DLLARLCPNSTGAEIRSVCTEAGMFAIRAR---------RKVATE--------KDFLEAVKKVIK 418
            ..:|......:||:|.:||.:|.:.|:|.|         |.::.|        :||..|:|||.|
  Rat   409 ASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREEMHMPTTMEDFEMALKKVSK 473

  Fly   419 S 419
            |
  Rat   474 S 474

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt1	NP_477473.1	PRK03992	88..430	CDD:179699	123/378 (33%)
Katna1	NP_001004217.2	Kp60-NTD	7..74	CDD:439297	7/41 (17%)
		RPT1	134..474	CDD:440835	113/346 (33%)
		RecA-like_KTNA1	212..381	CDD:410930	75/175 (43%)