DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and Psmc6

DIOPT Version :9

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_001093979.1 Gene:Psmc6 / 289990 RGDID:1308825 Length:403 Species:Rattus norvegicus


Alignment Length:415 Identity:176/415 - (42%)
Similarity:252/415 - (60%) Gaps:46/415 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LGDDQRKVKHDEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQKAVKQVNELTGIKESD 69
            |.|.::|:...::.|..:|.|.|...||.|     ||.||    |.|: ||::.|.::.|     
  Rat    23 LQDYRKKLLEHKEIDGRLKELREQLKELTK-----QYEKS----ENDL-KALQSVGQIVG----- 72

  Fly    70 TGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVAPTDI 134
                       ...||:.:.          |.|...::.|:|::..::          .:..:.:
  Rat    73 -----------EVLKQLTEE----------KFIVKATNGPRYVVGCRR----------QLDKSKL 106

  Fly   135 EEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199
            :.|.||.:|.....|...||.::||.|..|..||..:|:||::||..|||.:||||:|.||.:||
  Rat   107 KPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPE 171

  Fly   200 KFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA 264
            .|..:||.||||.||:|||||||||.|||||::.|..|::|:.|.:|.||:||.||::||:|..|
  Rat   172 LFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYA 236

  Fly   265 RSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 329
            |..:.|:||.||||||||.||.:|...|.|:|||::||:||:||||....:|::|||||||||||
  Rat   237 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDP 301

  Fly   330 ALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGM 394
            ||:||||||||:...||::..|..|.||||..::...:|.::.:.:|.....||::|:|||||||
  Rat   302 ALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGM 366

  Fly   395 FAIRARRKVATEKDFLEAVKKVIKS 419
            |||||......::||::||:||..|
  Rat   367 FAIRADHDFVVQEDFMKAVRKVADS 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 RPT1 27..430 CDD:224143 170/393 (43%)
Psmc6NP_001093979.1 RPT1 18..401 CDD:224143 176/415 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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