DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and Psmc6

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_001093979.1 Gene:Psmc6 / 289990 RGDID:1308825 Length:403 Species:Rattus norvegicus


Alignment Length:415 Identity:176/415 - (42%)
Similarity:252/415 - (60%) Gaps:46/415 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LGDDQRKVKHDEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQKAVKQVNELTGIKESD 69
            |.|.::|:...::.|..:|.|.|...||.|     ||.||    |.|: ||::.|.::.|     
  Rat    23 LQDYRKKLLEHKEIDGRLKELREQLKELTK-----QYEKS----ENDL-KALQSVGQIVG----- 72

  Fly    70 TGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVAPTDI 134
                       ...||:.:.          |.|...::.|:|::..::          .:..:.:
  Rat    73 -----------EVLKQLTEE----------KFIVKATNGPRYVVGCRR----------QLDKSKL 106

  Fly   135 EEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199
            :.|.||.:|.....|...||.::||.|..|..||..:|:||::||..|||.:||||:|.||.:||
  Rat   107 KPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPE 171

  Fly   200 KFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA 264
            .|..:||.||||.||:|||||||||.|||||::.|..|::|:.|.:|.||:||.||::||:|..|
  Rat   172 LFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYA 236

  Fly   265 RSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 329
            |..:.|:||.||||||||.||.:|...|.|:|||::||:||:||||....:|::|||||||||||
  Rat   237 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDP 301

  Fly   330 ALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGM 394
            ||:||||||||:...||::..|..|.||||..::...:|.::.:.:|.....||::|:|||||||
  Rat   302 ALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGM 366

  Fly   395 FAIRARRKVATEKDFLEAVKKVIKS 419
            |||||......::||::||:||..|
  Rat   367 FAIRADHDFVVQEDFMKAVRKVADS 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 154/332 (46%)
Psmc6NP_001093979.1 PRK03992 19..393 CDD:179699 176/415 (42%)

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