DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt1 and Yme1l1

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_038799.1 Gene:Yme1l1 / 27377 MGIID:1351651 Length:715 Species:Mus musculus


Alignment Length:417 Identity:125/417 - (29%)
Similarity:210/417 - (50%) Gaps:44/417 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 KEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQKAVKQVNELTGIKES--------DTGLAPPA 76
            |.::|:. .|::....:.||:..|::||....:|...:::.|...|..|        |.|....:
Mouse   129 KTLRSIC-SDLQYFPVFIQSRGFKTLKSRTRRLQSTSERLVEAQNIAPSFVKGFLLRDRGTDLES 192

  Fly    77 LWDLAADKQILQNEQP----------LQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVAP 131
            |..|...|.|.:..|.          |:....|:..|......:.|:       ||:.|.     
Mouse   193 LDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIL-------FVLLLF----- 245

  Fly   132 TDIEEGMRVGVDRNKY-QIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPL 195
                 |: .|:.:|.: .:.......:|..|..:|::   :||:..|.|.:|..::|:||||. |
Mouse   246 -----GI-YGLLKNPFLSVRFRTTTGLDSAVDPVQMK---NVTFEHVKGVEEAKQELQEVVEF-L 300

  Fly   196 LHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVREL 260
            .:|:||..||.:.|||:||.|||||||||.|||||...|..|....|||..:.:||.||..:|.|
Mouse   301 KNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNL 365

  Fly   261 FEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 325
            |..|::...|:||.||:|::||.|.:......:  ::|:.:|:.::|||.|...:.::.|||.|:
Mouse   366 FREAKANAPCVIFIDELDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPE 428

  Fly   326 TLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCT 390
            .||.||:||||.|.:|....||..||:.|.|.:...:..::.:..:::||.....:|||:.::..
Mouse   429 ALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVN 493

  Fly   391 EAGMFAIRARRKVATEKDFLEAVKKVI 417
            :|.:.|....:::.|.|:...:..|::
Mouse   494 QAALKAAVDGKEMVTMKELEFSKDKIL 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 107/341 (31%)
Yme1l1NP_038799.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 34..54
HflB <274..709 CDD:440233 94/253 (37%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.