Protein Alignment Rpt1 and Psmc4

DIOPT Version :9

• Sequence 1: NP_477473.1
• Gene: Rpt1 / 35701
• FlyBaseID: FBgn0028687
• Length: 433
• Species: Drosophila melanogaster
• Sequence 2: NP_036004.2
• Gene: Psmc4 / 23996
• MGIID: 1346093
• Length: 418
• Species: Mus musculus
• Alignment Length: 433
• Identity: 160/433 - (36%)
• Similarity: 232/433 - (53%)
• Gaps: 100/433 - (23%)

  Fly     3 DYLGDDQRKVK----HDEKEDKEIKSL-----------DEGDIELLKTYGQSQYHKSIKSIEEDI 52
            :|:.|:|:.:|    |.::|.|.|:|:           |:....:..|.|.:.|.:.:.:|:.::
Mouse    59 EYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDREL 123

  Fly    53 QKAVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQ 117
            .|                                                      |...:.:.:
Mouse   124 LK------------------------------------------------------PNASVALHK 134

  Fly   118 FAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKE 182
            .:..:||:                           |||:.|.::.|:..:.||||.|:|:||...
Mouse   135 HSNALVDV---------------------------LPPEADSSIMMLTSDQKPDVMYADIGGMDI 172

  Fly   183 QIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 247
            |.:::||.||.||.|.|.:..:||:||:|||::||||.|||:.|:|||:.|.|.||||:|||.||
Mouse   173 QKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ 237

  Fly   248 KYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR 312
            ||:|||.||||::|.:|:.....:||.||||||...|||...|.|.||||.:|||:||:||||..
Mouse   238 KYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQN 302

  Fly   313 GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRF-DLLARL 376
            .|:||:|||||.|||||||:||||||||:||.|||:..:..||......|::..::.. |.:||
Mouse   303 VNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVAR- 366

  Fly   377 CPNS-TGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIK 418
             |:. :||:|.|:|.|:||.|:|..|.:...|||.:|.|.|||
Mouse   367 -PDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIK 408

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt1	NP_477473.1	RPT1	27..430	CDD:224143	150/394 (38%)
Psmc4	NP_036004.2	PTZ00454	34..418	CDD:240423	160/433 (37%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D298123at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920