DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and Psmc5

DIOPT Version :9

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_032976.1 Gene:Psmc5 / 19184 MGIID:105047 Length:406 Species:Mus musculus


Alignment Length:414 Identity:196/414 - (47%)
Similarity:261/414 - (63%) Gaps:35/414 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 DEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEE----------DIQKAVKQVNELTGIKESD 69
            |..|..|::....|.       |..||:  :..|||          ::::...|.|||.      
Mouse     4 DGPEQMELEEGKAGS-------GLRQYY--LSKIEELQLIVNDKSQNLRRLQAQRNELN------ 53

  Fly    70 TGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVAPTDI 134
               |...|  |..:.|:|| ||...|....:.:    |..|.::.|....|||||:..::...|:
Mouse    54 ---AKVRL--LREELQLLQ-EQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDV 108

  Fly   135 EEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199
            ....||.:..:.|.:|..||.|:||.|::|.||..||.||..:||..:||::::||:|.|:.|||
Mouse   109 TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 173

  Fly   200 KFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA 264
            .|..|||..||||||:|||||||||.|||||:.||..||||.|||||||::|||||||||||.||
Mouse   174 LFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMA 238

  Fly   265 RSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 329
            |.....:||.||||:||.:|.:.|:|||:|||||||||:||||||:...||||:|||||.|.||.
Mouse   239 REHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDS 303

  Fly   330 ALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGM 394
            ||:||||:|||:||..|:::.|..|.|||:|.|::.|.|....:|.|.|.::|||::.|||||||
Mouse   304 ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 368

  Fly   395 FAIRARRKVATEKDFLEAVKKVIK 418
            :|:|.||...|::||..||.||::
Mouse   369 YALRERRVHVTQEDFEMAVAKVMQ 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 RPT1 27..430 CDD:224143 193/402 (48%)
Psmc5NP_032976.1 RPT1 4..404 CDD:224143 196/414 (47%)
May mediate interaction with PRPF9. /evidence=ECO:0000269|PubMed:17349974 186..406 129/207 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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