DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and Psmc5

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_032976.1 Gene:Psmc5 / 19184 MGIID:105047 Length:406 Species:Mus musculus


Alignment Length:414 Identity:196/414 - (47%)
Similarity:261/414 - (63%) Gaps:35/414 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 DEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEE----------DIQKAVKQVNELTGIKESD 69
            |..|..|::....|.       |..||:  :..|||          ::::...|.|||.      
Mouse     4 DGPEQMELEEGKAGS-------GLRQYY--LSKIEELQLIVNDKSQNLRRLQAQRNELN------ 53

  Fly    70 TGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVAPTDI 134
               |...|  |..:.|:|| ||...|....:.:    |..|.::.|....|||||:..::...|:
Mouse    54 ---AKVRL--LREELQLLQ-EQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDV 108

  Fly   135 EEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199
            ....||.:..:.|.:|..||.|:||.|::|.||..||.||..:||..:||::::||:|.|:.|||
Mouse   109 TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 173

  Fly   200 KFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA 264
            .|..|||..||||||:|||||||||.|||||:.||..||||.|||||||::|||||||||||.||
Mouse   174 LFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMA 238

  Fly   265 RSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 329
            |.....:||.||||:||.:|.:.|:|||:|||||||||:||||||:...||||:|||||.|.||.
Mouse   239 REHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDS 303

  Fly   330 ALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGM 394
            ||:||||:|||:||..|:::.|..|.|||:|.|::.|.|....:|.|.|.::|||::.|||||||
Mouse   304 ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 368

  Fly   395 FAIRARRKVATEKDFLEAVKKVIK 418
            :|:|.||...|::||..||.||::
Mouse   369 YALRERRVHVTQEDFEMAVAKVMQ 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 177/331 (53%)
Psmc5NP_032976.1 PRK03992 24..400 CDD:179699 189/387 (49%)
May mediate interaction with PRPF9. /evidence=ECO:0000269|PubMed:17349974 186..406 129/207 (62%)

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