DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and rpt-3

DIOPT Version :9

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_498429.1 Gene:rpt-3 / 175925 WormBaseID:WBGene00004503 Length:414 Species:Caenorhabditis elegans


Alignment Length:425 Identity:166/425 - (39%)
Similarity:242/425 - (56%) Gaps:60/425 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DYLGDD-------QRKVKHDEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQKAVKQVN 60
            |...||       :|::.|.:..:..|| |:..::|....:.|.:. |.|:|:...|.:.::.|:
 Worm    31 DVSSDDYIKLTTLERQLAHLQVMEDYIK-LETRNLEKELLHAQEEV-KRIQSVPLVIGQFLEAVD 93

  Fly    61 ELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDL 125
            :...|..|.||                .|    ...|...|::.:...|...:.:.:::..:||:
 Worm    94 QNHAIVGSTTG----------------SN----YYVRVLSILDRELLKPGCSVALHKYSNALVDV 138

  Fly   126 ADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREV 190
                                       |||:.|.::.|::.::|||::|.|:||...|.:::||.
 Worm   139 ---------------------------LPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREA 176

  Fly   191 VETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGAR 255
            ||.||.|.|.:..:||:||:|||::||||.|||:.|:|||..|.|.||||:|||.||||:|||.|
 Worm   177 VELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPR 241

  Fly   256 MVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMA 320
            |||::|.:|:.....:||.||||||...|||...|.|.||||.:|||:||:||||...|:||:||
 Worm   242 MVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMA 306

  Fly   321 TNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRF-DLLARLCPNS-TGA 383
            |||.|||||||:||||||||:||.|||:..:..:|......|::..|:.. |.:||  |:. :||
 Worm   307 TNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVAR--PDKISGA 369

  Fly   384 EIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIK 418
            :|.|:|.||||.|:|..|.|...||..:|.|.|:|
 Worm   370 DINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVK 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 RPT1 27..430 CDD:224143 158/394 (40%)
rpt-3NP_498429.1 PTZ00454 35..414 CDD:240423 165/421 (39%)
AAA 198..331 CDD:278434 86/132 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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