DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and rpt-3

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_498429.1 Gene:rpt-3 / 175925 WormBaseID:WBGene00004503 Length:414 Species:Caenorhabditis elegans


Alignment Length:425 Identity:166/425 - (39%)
Similarity:242/425 - (56%) Gaps:60/425 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DYLGDD-------QRKVKHDEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQKAVKQVN 60
            |...||       :|::.|.:..:..|| |:..::|....:.|.:. |.|:|:...|.:.::.|:
 Worm    31 DVSSDDYIKLTTLERQLAHLQVMEDYIK-LETRNLEKELLHAQEEV-KRIQSVPLVIGQFLEAVD 93

  Fly    61 ELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDL 125
            :...|..|.||                .|    ...|...|::.:...|...:.:.:::..:||:
 Worm    94 QNHAIVGSTTG----------------SN----YYVRVLSILDRELLKPGCSVALHKYSNALVDV 138

  Fly   126 ADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREV 190
                                       |||:.|.::.|::.::|||::|.|:||...|.:::||.
 Worm   139 ---------------------------LPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREA 176

  Fly   191 VETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGAR 255
            ||.||.|.|.:..:||:||:|||::||||.|||:.|:|||..|.|.||||:|||.||||:|||.|
 Worm   177 VELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPR 241

  Fly   256 MVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMA 320
            |||::|.:|:.....:||.||||||...|||...|.|.||||.:|||:||:||||...|:||:||
 Worm   242 MVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMA 306

  Fly   321 TNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRF-DLLARLCPNS-TGA 383
            |||.|||||||:||||||||:||.|||:..:..:|......|::..|:.. |.:||  |:. :||
 Worm   307 TNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVAR--PDKISGA 369

  Fly   384 EIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIK 418
            :|.|:|.||||.|:|..|.|...||..:|.|.|:|
 Worm   370 DINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVK 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 147/333 (44%)
rpt-3NP_498429.1 PTZ00454 35..414 CDD:240423 165/421 (39%)

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