DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and F56F11.4

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_001367906.1 Gene:F56F11.4 / 175403 WormBaseID:WBGene00018991 Length:432 Species:Caenorhabditis elegans


Alignment Length:403 Identity:194/403 - (48%)
Similarity:263/403 - (65%) Gaps:28/403 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SLD-EGDIELLKTYGQSQYHKSIKSIEE---DIQKAVKQVNELTG----IKESDTGLAPPALWDL 80
            :|| ..|.:.|:.|.:::..::.:::.|   ::::.:.|..||.|    :||..:.|        
 Worm    36 TLDANSDEQTLRPYFKTKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHL-------- 92

  Fly    81 AADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRN 145
                    :||...|....|.:    |..|.::......|::||:|.||..:.:..|.||.:..:
 Worm    93 --------HEQGSHVGEVCKAM----DKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRAD 145

  Fly   146 KYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPK 210
            .|.||..||.|:||.|::|.||..||.||..|||...||::::||:|.|:.|||.|..|||..||
 Worm   146 NYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQPK 210

  Fly   211 GVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKACLIFFD 275
            ||||:|||||||||.|||||:.|:..||||.|||||||::|||||||||||.|||.....:||.|
 Worm   211 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMD 275

  Fly   276 EIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRK 340
            |||:||.:|.:...|||:|||||||||:||||||:...||||:|||||.|.||.||:||||:|||
 Worm   276 EIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRK 340

  Fly   341 VEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVAT 405
            :||..||:..|:.|.|||:|.|::.|.||.|.:|...|.::|||::||||||||||:|.||...|
 Worm   341 IEFPAPDEKARAQILKIHSRKMNLMRGIRMDKIAEQIPGASGAEVKSVCTEAGMFALRERRIHVT 405

  Fly   406 EKDFLEAVKKVIK 418
            ::||..||.||::
 Worm   406 QEDFEMAVGKVMQ 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 181/331 (55%)
F56F11.4NP_001367906.1 PRK03992 41..426 CDD:179699 192/398 (48%)

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