Protein Alignment Rpt1 and rpt-4

DIOPT Version :9

• Sequence 1: NP_477473.1
• Gene: Rpt1 / 35701
• FlyBaseID: FBgn0028687
• Length: 433
• Species: Drosophila melanogaster
• Sequence 2: NP_001022113.1
• Gene: rpt-4 / 173384
• WormBaseID: WBGene00004504
• Length: 406
• Species: Caenorhabditis elegans
• Alignment Length: 413
• Identity: 176/413 - (42%)
• Similarity: 259/413 - (62%)
• Gaps: 48/413 - (11%)

  Fly     5 LGDDQRKVKHDEKEDKEIKSLDEGDIELLKTYGQSQYH-KSIKSIEEDIQKAVKQVNELTGIKES 68
            |...:||:......::::|.|.:.:.|:.|.:.:|:.. ||::|:.:.:.:.:||::|
 Worm    26 LNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSE------- 83

  Fly    69 DTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVAPTD 133
                                          .|.|...::.|:|::..::          |:...:
 Worm    84 ------------------------------EKFIVKATNGPRYVVGCRR----------SINKEE 108

  Fly   134 IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHP 198
            :::|.||.:|.....|...||.::||.|..|..||..:::||||||..|||.:||||||.||::|
 Worm   109 LKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINP 173

  Fly   199 EKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEM 263
            |.|..:||.||||.||||||||||||.|||||::.|..|::|:.|.:|.||:||.|||:||:|..
 Worm   174 ELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNY 238

  Fly   264 ARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLD 328
            ||..:.|::|.||||||||.||.:|...|.|:|||::||:|||||||..|.:||:||||||||||
 Worm   239 ARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLD 303

  Fly   329 PALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAG 393
            |||:||||||||:|.|||::..|..|.|||:..::...:|.|:.:.:|....:.|::|:||||||
 Worm   304 PALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAG 368

  Fly   394 MFAIRARRKVATEKDFLEAVKKV 416
            ||||||.|:...::||::||:||
 Worm   369 MFAIRAEREFVIDEDFMKAVRKV 391

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt1	NP_477473.1	RPT1	27..430	CDD:224143	171/391 (44%)
rpt-4	NP_001022113.1	RPT1	21..404	CDD:224143	176/413 (43%)
		AAA	188..320	CDD:278434	86/131 (66%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D298123at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920