DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and AFG3L2

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_006787.2 Gene:AFG3L2 / 10939 HGNCID:315 Length:797 Species:Homo sapiens


Alignment Length:265 Identity:111/265 - (41%)
Similarity:164/265 - (61%) Gaps:5/265 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 TMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCA 226
            |...::|:.||.:.||.||:|...::.|.|.. |.:|:::.:||.:.|||.:|.|||||||||.|
Human   295 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLA 358

  Fly   227 RAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGG 291
            :|.|...:..||.|.|||.::.:||.|...||:||.:||....|::|.|||||:|..|.....||
Human   359 KATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGG 423

  Fly   292 DNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFK 356
            .:|.:.|:.:|:.::|||:...|:.:|..|||||.|||||:||||.||::..|.||..||:.|||
Human   424 QSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFK 488

  Fly   357 IHARSMSVERDIRFDLLAR----LCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVI 417
            :|.|.:.::..:..|.|||    |.|..:||::.:||.||.:.|.|.......:|.|.:|:::||
Human   489 VHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVI 553

  Fly   418 KSYAK 422
            ....|
Human   554 GGLEK 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 111/265 (42%)
AFG3L2NP_006787.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 76..126
HflB 151..747 CDD:440233 111/265 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 759..797
Blue background indicates that the domain is not in the aligned region.

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