DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43340 and Rp1

DIOPT Version :9

Sequence 1:NP_001246184.1 Gene:CG43340 / 35698 FlyBaseID:FBgn0263077 Length:3213 Species:Drosophila melanogaster
Sequence 2:XP_008761780.1 Gene:Rp1 / 681377 RGDID:1596713 Length:2150 Species:Rattus norvegicus


Alignment Length:2486 Identity:469/2486 - (18%)
Similarity:798/2486 - (32%) Gaps:832/2486 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   775 IPGQNAPV---EIVSQMKADDVTPLESVQIVPEITPPTDIVPEDQSNVESIQVASTAEVVHVPLP 836
            :||.::.:   ::.|:|..   ||..|..:: .:|.....||...|||....||..........|
  Rat    10 MPGISSNIFLSKVSSKMSE---TPSTSFSMI-RLTSSEGQVPSRHSNVTHPTVAKRISFYKSGDP 70

  Fly   837 VESGPEIPV------PFEIVPDPVDPPEVINFVSLDMETPMPLDYDPETIKLDQG------HVAN 889
            ...|..:.|      .|:.:.|.:.....:.|...::.||.......:..:|:.|      |...
  Rat    71 QFGGVRVVVNPRSFKTFDALLDNLSRKVPLPFGVRNISTPRGRHSITKLEELEDGESYVCSHNKK 135

  Fly   890 LVPGD-------PTASLSERIPEMIADPTAAALPEPSPIP---------VPVDNGTQLDELGTIE 938
            ::|.|       |...||.|.........:|....|:..|         |...||          
  Rat   136 VLPVDLDKARRRPRPWLSSRSISTHVKLRSATATMPTTAPGLFRAPRRLVVFRNG---------- 190

  Fly   939 DDSHTTSVPMESVSIVEPQVPVEA--DALTQ--SDPVNLLESLDNVEIPPLPGPICSEPANIAAD 999
             |..|..|.:.|..|.:   ..||  ..|||  ..||..|.:.|..::|.|...|.|..|.:||.
  Rat   191 -DPKTRRVVLLSRRITQ---SFEAFLQYLTQVMQYPVAKLYATDGRKVPSLQAVILSSGAVVAAG 251

  Fly  1000 SS-------------LPL-----------EAAEPVESTPIEVATLDSPQ--SVDTELPTAVESLV 1038
            ..             ||:           :....:|...:...::..||  |:.:|......|..
  Rat   252 REPFKPGNYDIQKYLLPVKLPGISHRVHRKGKAKIEKRKMSTHSVPRPQTDSLASEKTYDCFSDF 316

  Fly  1039 SVGMLKDVESVDVNGSETLGVSLGTD----SIVVTQPQA------------EETVKPSASV---- 1083
            ||.. ::..:::.:.|:||......|    |||..|...            |||||.:.:|    
  Rat   317 SVAP-ENYLALETHDSQTLSTYPSEDGVEKSIVFNQDGTMTVVMKVRFKIKEETVKWTTTVNRAD 380

  Fly  1084 ---------------EIDSENQTVALVVNVPESQEIS------------------EEAVSSIETI 1115
                           :.:..:.::.|||....|::|:                  ::|:||....
  Rat   381 LSNDDEKSKISSYPGKTEDRSSSLKLVVPCSLSEDITDTTQQGSLTEEENTQMTEQQALSSSSAG 445

  Fly  1116 SPPFSTEVAVPVKSIDVETLESPGATEPASVEQSETVDIAPEIHNVNPSEHCESVPEANVNIPSM 1180
            ....|.||.:......|:....|....|..:.|.::|     |..|.      .|.|..|.    
  Rat   446 WENASMEVGIQGSQKQVKHFYRPPTPGPRRMRQKKSV-----IGTVT------VVSETEVQ---- 495

  Fly  1181 EIVPLENSPSMEIQDELPQ----------TLESSSVDPQEVQPVAVDPLPVTEVVPDVVPVEPPS 1235
                 |...|...:.|:.:          ..:.|||..:.||..:.|              |..|
  Rat   496 -----EKQFSYREEREVGEKSKYHMFTHSCSKMSSVSNKLVQISSDD--------------ERES 541

  Fly  1236 IVETDPETREIE----NLDPMEIKPD---------------PESSTIENLT---PIDSLAAVESI 1278
            .:|...|:..::    |...:||...               ||:|.:|..|   .|...|.::..
  Rat   542 ALERTKESGPLKSHAINAGAIEITSQRVLKMCHNNALASTVPENSVVEEGTDDSAISGKATIKHF 606

  Fly  1279 DVKNQINSSNHMEQQNISIEPQPTVPMDTIQPIEIVQEVPCNTVDLIATTEAVN-------ADHS 1336
            ......|.|......:.::......|     .:..:.||| :....:.||..||       .:| 
  Rat   607 RTCGNANDSFSSTTADTTLTSGNNCP-----NVRTISEVP-SVGSPVLTTGLVNEFAHCGLTEH- 664

  Fly  1337 EPG--------------------------------------------EAGLISEVLQFHSSGGDL 1357
             ||                                            .||.|::|:....||| |
  Rat   665 -PGNGRQISSPFASKKKKKSQQRMITSKDKKKVIETKGIPNKVGKIHRAGTIAQVVLLQDSGG-L 727

  Fly  1358 PETDSRAIEPLPLAPPA-EVIEVVPLGSA--------------------ELLS--PSEPTEVVSP 1399
            .:......|.|..:|.. |..::.|.|::                    :||:  .|.|.::.|.
  Rat   728 DKEGRVREEELDTSPMVIESHDIFPKGNSKFSKNFHKNKLNTVQNPKTQKLLAKRKSRPLKIKSI 792

  Fly  1400 SAIALPEKPEPMENATEIEIEEMVSPTSVE------IVPTTTED---LHQAESVVETA------- 1448
            ..:...|..:  |:...:..|..:..:::|      :..:..||   ||:::|.|||.       
  Rat   793 GELRKQETGQ--EDKVFLHSESKLCESNLEKQSLLHVFSSLEEDQKALHRSQSQVETVTENWKGM 855

  Fly  1449 RPVSAVEEVKPIE-----------------------------DSTAAIDKSPQISPIEGEHSQHS 1484
            ...|.|.:|..:.                             |..|:: |.|.::.....||..|
  Rat   856 TKKSLVPKVNDLHVTVRNQRKQKGVKLKSGATVSEQHIATRADPLASL-KKPDLTEGIPHHSVKS 919

  Fly  1485 -------------EKETPESVEVGLDSPNVADVITTSVEVIPTSTTAVTTSDGASTEMPEPPKIY 1536
                         :.|..:|..:|.|..||.:..:..   .|.:....|:|.|.|..|....:  
  Rat   920 YIQRWLQNINPYPDFEHRKSAPLGQDRSNVVNYNSNG---FPENNLPTTSSKGKSFLMESNKR-- 979

  Fly  1537 CETAPPAAEEIEQNETVETLSVSADTTLPEE--IVSQDGNLEAS-----------EQTASIDVTF 1588
             :|.....:..:..||.::|.|..:...|.:  ..|||.:|..|           .||:..|...
  Rat   980 -KTKNANWKGNKNQETSKSLVVKDNGEQPNKHSCESQDESLYDSYLGPLHDNCTLSQTSINDPCT 1043

  Fly  1589 QANLNNMESKGCVE-VAVDVRESKEDETLMEPIAVDVAVPVEVVPQCAGVELGVSEPEEATPATN 1652
            :::|:..:|:..|: |..::..|.:.:||      :||:.|:                       
  Rat  1044 KSHLSTEKSRPEVKLVYQEMNFSTKRQTL------EVAIQVD----------------------- 1079

  Fly  1653 NLTSGENPPEEVSELVDVEPRNPHEEIHTDSFEKDSQKSSDAVALHEDNTKSEEKVDPPQVAEEV 1717
              |.|||.|:::..|:         ..|.::|..::||..:.::..           |..:||.|
  Rat  1080 --TMGENVPKDLLALL---------LQHLEAFIPNNQKHQNGISQL-----------PGSLAEVV 1122

  Fly  1718 APDII-------------------------TLDPPSLVELSPDTQAMAIGNIAPFDIILEPESIV 1757
            .|..|                         ..|.|.....|.:|.|:                  
  Rat  1123 FPSAIYNSSTNLLLAWLLVLNLKRNMNSFCQSDAPKTTSRSSETAAL------------------ 1169

  Fly  1758 IEQPVPVVKPETIVVESDPEAIDHTALLEPSVSAEVQDKVESAQ--------------------- 1801
                :.|:|...|..|:|            .:.|.|.:.|||.:                     
  Rat  1170 ----LDVLKHVAITEEAD------------DLKAAVANLVESTKTCSGPSGREQDTAPANCIAAS 1218

  Fly  1802 ----QQVSENKSVEEDSLKVSIGERG---------EIISMDPITPAD-----------AVSEQNF 1842
                .:..||||.::..|......||         |::|....||::           .|:.|| 
  Rat  1219 LHSVDKCKENKSTQKSLLDEGYSVRGDCGPELCVLEMVSKSNNTPSEGHTVSMTYPPKGVNNQN- 1282

  Fly  1843 RVEDPITSTESTAVEVIASESINTVVEPV----------------SVAQSPTIEDSTPEEVTQCS 1891
              :...||.:|:.:...::.:.:.:.|..                ::.::..:.|.|...:..|.
  Rat  1283 --DALFTSNDSSTMSQRSTHNASFLGEACLLTDSLCSHKACAQKDNIYEAACLSDETHIPIRDCK 1345

  Fly  1892 A---VNSTDTEVASAAPIQVDQKIQPVHVELVSQIEASDLQESPKDTAQVESDSVDQAILTQVSE 1953
            .   |||.:.:...             ::||..:|:..|  :.||| ..:.:||:|:      :|
  Rat  1346 TIEFVNSKENKCTD-------------NLELTEEIKTVD--KVPKD-LNILADSIDK------NE 1388

  Fly  1954 TDSIVVEPSSPVKQSEDSQGEPPGSAQNVL----------DVGPVEMDQSAPEEVPETDPVAVEP 2008
            :|.           |..||.....|:|.:.          |..|:|..|:.|.:    ..|..:.
  Rat  1389 SDI-----------STSSQNVNKLSSQGIFLSKTHLDSDKDYSPLEEFQNCPPK----KIVNKKK 1438

  Fly  2009 SVPVEEEVIEVIQPAPKEISDSV---ERTLDSLGNTDLVAEAESVDTPAENAGPEIGTSE-LEKE 2069
            ||..::|.....: .|:.|::||   ||...|  ..:...|:||.||...|.  ::.|.| ..||
  Rat  1439 SVSSDKEDSRTSE-EPRSITNSVTSSERNATS--ELESFEESESQDTGIFNM--KVRTEEKAAKE 1498

  Fly  2070 LLVVSTTIDEQPSAVLEPLVLICQAESTNLDHELPENLVPQGQSVPASLPTNLTIQTQPTDLETQ 2134
            .:       ::.|.....|.||      |:.   ..|::.||:...|.|.|....|..|      
  Rat  1499 SM-------QKESEARMSLELI------NIS---GRNIIEQGRRNTAFLETTGRGQVTP------ 1541

  Fly  2135 PSMELILQTETVDAEMVKPVDMGDSTVDKSQETGEMVLKLESSKWEPLEATELV-TMEPSSETES 2198
            ||:.....:              :...:|....||..::::          ::| :||..|.|:|
  Rat  1542 PSLVFCYDS--------------NKNTEKEMSVGETKMRVK----------KIVDSMENESYTDS 1582

  Fly  2199 TCADSKIYANLVP-QLDSVPLSVPTELR-----IQPEPEEPHAFENPIPETV--SSSEDLLEPAQ 2255
            :...:|.:.:  | .||.......:|.|     :..|..:....|...|..:  .:.|.|...|:
  Rat  1583 SLNCNKQHRS--PGTLDWSDYGSDSESRYPCKALSYEHSDDTGQEREYPRGIVRRAIEKLYGKAE 1645

  Fly  2256 VL--------IQEDPVALENLPGVPIVPDVHAHNFEPSPVEITSQSADTNAIVPVEVETIMKPET 2312
            ::        |.:..|...|...||.|...|.:..|...: ::|:....::::..|.:...:.|.
  Rat  1646 IIKPPFFHGSIHKSQVCPYNPVEVPCVKKTHFYESECQSL-VSSEQVSRSSLMLQEFQEERQSEV 1709

  Fly  2313 EAPSPMAVESTPDLEAVALDTKESVPAAQAIPVEVVPETEHLTEETKNETAKMDAEPARISVEIV 2377
            :| :.|. :|..|                       ...|.:|:.:::....|:.|..::     
  Rat  1710 DA-NGMG-DSFGD-----------------------SSIEKVTKPSEHGRVFMEKEKGKL----- 1744

  Fly  2378 QEEQPLSLGNKIPVENETSSAPVEAP-----FDTVSIPASVDSVEQKESNASEEP--HFGEDILK 2435
                 :..|..:..||......::.|     .||.|:...:|      .|:.|.|  ||||    
  Rat  1745 -----IDNGKWLLRENHLWRVSLDNPGMYGNADTTSVDTLMD------KNSIEVPYSHFGE---- 1794

  Fly  2436 NDDAILETVTANADLSSDAQLASIDQELKDPATEGIHKNTSVDSSYGDCFALGKATTHKYLRRQP 2500
                 |......|:||| :::..:.|.|:.........:.|....:|:.| |....|:....:.|
  Rat  1795 -----LAPGPTMAELSS-SEIEEMTQPLEVKCNYFNFPHGSDSEPFGEDF-LDAQNTNCPKEKIP 1852

  Fly  2501 NIRDTPPSDADSPKRSEPV--------NLFGTICKFYIKDKRLLATIERRRRRSLIMHKYLSSFD 2557
            |.......::.|.:...||        |....:|...||.:.|..        |.|.|..|...|
  Rat  1853 NHHKEEKRNSPSERTCTPVTQTFASAGNKVHPVCSDVIKTQPLPG--------SSITHGALQEGD 1909

  Fly  2558 SLD-----------------DSIDE----VAY--DSHT------SLFEELNEVSLHSSKDIQPPT 2593
            |||                 ..::|    .||  ||..      .|:.|:....|.|.|::....
  Rat  1910 SLDKLYALCGQHCPILTVIIQPVNEEDRGFAYRKDSDIENSLGFQLWMEIYPFLLQSKKNMFTSE 1974

  Fly  2594 GRAATPVSEVDPIG--LVDNCFAFETD----KTETDMVDDLSVDTDKSECIVNMKNMPKCDLETK 2652
            .|...       :|  ..||......|    |...|:||      .::..:....|:.|..|..|
  Rat  1975 SRKVN-------VGKQFTDNAIGNLCDRLYFKNMIDLVD------KRANSLREEVNLNKVQLYLK 2026

  Fly  2653 IE-SDNLESLDTLTSPCIVSAKNRVESLDFQSRTDTANDACLEIDASD----------NPEDHLK 2706
            .. ||.|.|     |..:|...|.| ||...:.||...    .:|.::          ||...::
  Rat  2027 KRFSDLLPS-----SSLVVWDMNSV-SLTPSNWTDNFK----SVDENNFINRFQNSRKNPNQVVR 2081

  Fly  2707 -------HLEVDVTVGDNVILRLDMASQTSCDMADELEVEADSTIAFSLSDITYNFINEILF--- 2761
                   |.|:   .|...:|.:       |.:...|.::..|.:     :|.|....|:||   
  Rat  2082 EENSCQFHWEL---FGQVYLLDI-------CQVEKSLHIKTRSKL-----EIYYILGGEVLFIWE 2131

  Fly  2762 -SDQLGSESIQSDESE 2776
             .:||....|:|...:
  Rat  2132 EENQLNIIDIESPNDQ 2147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43340NP_001246184.1 FYVE_BSN_PCLO 63..119 CDD:277290
Rp1XP_008761780.1 DCX 60..135 CDD:176357 11/74 (15%)
DCX 182..257 CDD:176357 24/88 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1181
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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