Sequence 1: | NP_001260781.1 | Gene: | Vps13 / 35693 | FlyBaseID: | FBgn0033194 | Length: | 3321 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001382518.1 | Gene: | Vps13d / 313825 | RGDID: | 1308403 | Length: | 4390 | Species: | Rattus norvegicus |
Alignment Length: | 4575 | Identity: | 832/4575 - (18%) |
---|---|---|---|
Similarity: | 1467/4575 - (32%) | Gaps: | 1613/4575 - (35%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 VFEAVVADVLNKVLGDYIENLDRNQLKIGIWGGDVVLQNLKIRENALDELDLPVQLIYGYLGKLV 66
Fly 67 LKIPWKNLYSQPVIVNIEDLYVLVSPNNNVQYNAEKEAKYEMDLKKAALDALEAARKKELEMDQP 131
Fly 132 KADA---GFAEKLTAQIVNNLQVQITNVHLRYEDTTTTGS-PFSFGISLHELELYTTDCDWEKCY 192
Fly 193 MAQQASQVFKIANLSCLSAY--LNCGGQLYANNKSDLSQ-QFKTNIACKETKPNYNYVLGPISCN 254
Fly 255 AKLKLNMNPELDDPPF---EKPKIDLTLEMEKLNVGLTNTQFDNLMKLGDAMNRQQLGIPYRKYR 316
Fly 317 PYNIPYKGHARDWWHFAITSILEEEVRKPRESWTWGHIKTHRERCNTYAQKYKEQCLSKKPSAVL 381
Fly 382 T-----ETCRLLETELDVFNLLLIRQRVNIEIAKQREAV-----------------PEQKSG--- 421
Fly 422 ------WFSGW-GWGGGAKKDDQTTSQKLVEKFEAAMTSEEKEKMY--RAIGYQENAKPTD---- 473
Fly 474 ----LPESYEAIRMNFKLIALEVGLYKDERNSSAATKDFHELPSLVLLNFSMATALITQRPAAEA 534
Fly 535 ISIIAGMREIKVTGL------TRNDYTPLLV-------ESKITDEFNL----------------- 569
Fly 570 ---LEVFFETNPLDKLCDQRVKVVARPLQITYDAPTILALINAFQTPGDVTLSKF---------- 621
Fly 622 EDAASTKISNFKERSATGMQYMIDKKAVLD-----------VDILLMPNILVVPHKGVYDAGNVS 675
Fly 676 LLVVSMGQVHLS----------------------------------SQPRRESN----KLQHLFS 702
Fly 703 AGEDKDEILKT--VMENAYDRFTVAVDDVQMLVVRAGEPWQNALAEANSTEMHVLRP--VSLKVT 763
Fly 764 AALCVVDNDPRLPNIKVDIDLPAILVNVSEDRIFLAIKVATSIPLPEQK---------------- 812
Fly 813 -----EPASRLTQ----------------------------------------------TNSR-- 824
Fly 825 ----------------------------------------------------------------- 824
Fly 825 -----------SSMSISNFINKE------------------------------------------ 836
Fly 837 --VKKIGPSASGSSASKD-----PLLDEI---------IQYT----------------------- 862
Fly 863 ---------------------------SLDVNFSLG----------------------------- 871
Fly 872 -------EINFVLFQ---------------SSRKC------------------------------ 884
Fly 885 ----------------------ETSPDVSIEFLTPD--------------GDVLPSQ-------- 905
Fly 906 LTENIQEPIEELP--PTPPQQI-----------------------LSIDIRRL------------ 933
Fly 934 -------------------------EAHF-------------------------------VSKTY 942
Fly 943 E---SVATVKLGDINLRQYD-------------------------------------------CQ 961
Fly 962 DSDMDVLDVIYTPKQENSSNYLFTVSCTIADKSSPEFSTKYNSTEQLVVAN-------------- 1012
Fly 1013 --------------FEV-----------LQIVLHQECLQRIME---------------------- 1030
Fly 1031 ----------------------------------VVNNFQRNLDLVL------------------ 1043
Fly 1044 -SSTRPRDRMGSIGGGDGIKRTLNVILEDTEEIMTTDQMKRRKK-------------TRRTHVV- 1093
Fly 1094 -----------------------ETVKVRVIANLD----------------QVGLVLTGRKRPIA 1119
Fly 1120 EMNVKKFVSSLIIKSSYTEVNIGLKDIQVLDLNPY-TIHKNILSIVGKDAFNCQIVIYNKEETQD 1183
Fly 1184 YNSDDMKITVDIGCMKIIFLNWFVAGVMNFLNNFTAAQATIS-QAGAAAAESARQKAMDAYETAT 1247
Fly 1248 RMKLNIRIKAPIIIVPIGSQDRNALLLDLGLLELTNNTV-------------------------- 1286
Fly 1287 -------------------------------------------------------EVAVAEEERL 1296
Fly 1297 AVID--EIKLQICDVKISKIVLLDGNESTVDEVDAEVGFLSKF-------NMMNPMSCTLSITRN 1352
Fly 1353 LSYTWYRDVPELNLSGRLKSIELTLFADDYALVMLVLNRNLNEGLEEFPPSEEAPQEAQVRP-ER 1416
Fly 1417 RNSRAGRLSRTVQVSPIREKIHESIKFNFQFDGVVINLME---GEGAG-LARFGIYFLSVKGTKL 1477
Fly 1478 DNGTLSTSVVLCNIQMDDMRSNSKSQIRQYLSRKDWVQPKLDTDEIIDACY--------NERNFM 1534
Fly 1535 VDVTAIIKEDDTFAEVRVRGFDLIVCIDFLLKLTTFLTLPPEENPRESVYIKPA----PVSETAR 1595
Fly 1596 DTKHSIRSSAILAAQELVPVESSSHEVPNRKMNLILHIDEPDIILVENLEDLNTSCIIFNAQVHL 1660
Fly 1661 NYRSINDKQIVNGQIDALKMYMCAFLPERREMTRHYILHPCVISLQ----GSTPEEEG------- 1714
Fly 1715 ------MHISLKLSDIIINVSPATIELL--------------NKAML---SVSSGTMTKCAIAEE 1756
Fly 1757 SRNYSN----------------------------LWHQHHFHSRTYWFTKVEQGVDALEAEQRSV 1793
Fly 1794 STDNEKQKTEKCVIEIPSITLVIESGVGYYTKPLISLDTRITAVFNNWSR---------SLTAHG 1849
Fly 1850 SLTLNMNYYNQALAEWEPIIELNEVIGRNGVREYTPWELKFEMGMEKVQSELEDDAEQQAMHMNI 1914
Fly 1915 HSAETLEITLSKTCLGLLSELAEAFSQAIDQNGLTKPDIVAPYVLEND----------TGFDVN- 1968
Fly 1969 --------------------LNLRKGIFTLHEV----------------HRGGTPVGA--NSTLL 1995
Fly 1996 MVAQSEEVDPSVIKTCTISTGGRAYLQTKDLSTLSE-------------------------EDSE 2035
Fly 2036 DYTLYVTIGDINKEIALPVSKSDTRFF-------NLMRST------------------SHEPWGI 2075
Fly 2076 ISEVKQEYGTTKV-NIHGVVSVHNHFTTGLNIYRRNP-APTAQCFEDIFVGRVRPGEVFHVPLH- 2137
Fly 2138 ---AIYAESKDL--FFSMRGYRRSVQGISW------ASNPSDLNYSHQLHCDPTNTFEPLIMNAR 2191
Fly 2192 RSKSEVY--------FENTNKYTLLSAFYTIHLRPPLYLRNSLPINIQVSVAGCSVR------KE 2242
Fly 2243 DGLDAQSSQRFVDRGYRKEDFLDYGEKPVNSGDVLHLPTVRLASKGKESKSFLVVRLVQYLEKDW 2307
Fly 2308 SCATEIWDYTDDVITWTFSSYDSEMKVDMDLYVKTENRHGSLMLTLFSPFWMINKTGMMLTYKSE 2372
Fly 2373 TTSVEVLYHPPEYS-----GPILFTFRDKLFFDKKKASIRIDNG-------QWSEKIPLDVAGSV 2425
Fly 2426 GEVICFANNQK----YPVGVHNHLTQNSL--TKQITFIPFYIVCNKCHFDIEL--------QEQS 2476
Fly 2477 RPADPWLHLEPNEMEPLWPRNDTKNNLVVR---VDGKI-TPAFDFTEVICTLLKLEDS--KYGGI 2535
Fly 2536 NVDVQTTEGGVY-ITFTDYKPADAPGLLINHTGKQIVYHEKGTKNEHILNAKSTIM---YAWDDP 2596
Fly 2597 TGPKML---VFGTNKEETDLKRDGIGEVIMQDGGKVLWVSFL--------DGL------------ 2638
Fly 2639 ---------------QRVLL------------------FTENESIA-----NRTESTASLQ---- 2661
Fly 2662 --------------------------SITQS-------IDLRIHGIGLSVINNETGLDILY---- 2689
Fly 2690 --LGVTSS----GIIWESKKVTKNRF-----------------KELTINENALLEIEYQKYLVHK 2731
Fly 2732 -SVNDVQTYKLDN-----------KFPIDFDLMILKKTVERNLRRSF------YPAIWLSRKSSP 2778
Fly 2779 FQSQLHVKINRIQVDNQFLDPIFPVVL--APIPPPKSVASTTSLKPFIECSMVQRIMPNSTVRQF 2841
Fly 2842 KYARILIQEFLFKVDLNFLTAIAEMFAKEVSDEAAAKQFRQDVESIELPLSAFFEEHSLEEQKSF 2906
Fly 2907 YDNLHLGPLKIHVSFSMAGSDTKALPGFLGSLVQGVGVTLTDVNDVVFRLAFFEREYQFFSQKQL 2971
Fly 2972 INEITSHYTGQALKQLYVLVLGLDVLGNPYGLVVGLKKGVEDLFYEPFQGAIQGPGEFAEGLVL- 3035
Fly 3036 -GVKSLFGHTVGGAAGAVSKITGAMGKGLAALTFDEDYQKKRRQGIQNKPKNFHEGLARSSKGLV 3099
Fly 3100 MGFVDGVTGVVTKPVTGAR-DNGVEGFFKGLGKGAIGLVARPTAGVVDFASGSFEAVKRAADAS- 3162
Fly 3163 --EDVKRMRPPRFQHYDFVLRP-YCLMEATGNKIMKETDKGKFATTDN-----FIHCEEIIQKSE 3219
Fly 3220 YLVVTNYRVM-------YVQRNEMF 3237 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13 | NP_001260781.1 | Chorein_N | 4..113 | CDD:315323 | 41/108 (38%) |
VPS13 | 140..370 | CDD:318996 | 61/236 (26%) | ||
VPS13_mid_rpt | 574..807 | CDD:318998 | 61/295 (21%) | ||
SHR-BD | 2349..2600 | CDD:310922 | 65/286 (23%) | ||
VPS13 | <2701..3232 | CDD:330393 | 134/586 (23%) | ||
VPS13_C | 2904..3074 | CDD:318997 | 41/171 (24%) | ||
Vps13d | NP_001382518.1 | None |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D4159at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |