Sequence 1: | NP_001260781.1 | Gene: | Vps13 / 35693 | FlyBaseID: | FBgn0033194 | Length: | 3321 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001094445.2 | Gene: | Vps13a / 309243 | RGDID: | 1311340 | Length: | 3167 | Species: | Rattus norvegicus |
Alignment Length: | 3466 | Identity: | 1043/3466 - (30%) |
---|---|---|---|
Similarity: | 1731/3466 - (49%) | Gaps: | 457/3466 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MVFEAVVADVLNKVLGDYIENLDRNQLKIGIWGGDVVLQNLKIRENALDELDLPVQLIYGYLGKL 65
Fly 66 VLKIPWKNLYSQPVIVNIEDLYVLVSPNNNVQYNAEKEAKYEMDLKKAALDALEAARKKELEMDQ 130
Fly 131 PKADA--GFAEKLTAQIVNNLQVQITNVHLRYE-DTTTTGSPFSFGISLHELELYTTDCDWEKCY 192
Fly 193 MAQQASQVFKIANLSCLSAYLNCGGQL-YANNKSDLSQQFKTNIACKETKP-NYNYVLGPISCNA 255
Fly 256 KLKLNMNPELDDPPFEKPKIDLTLEMEKLNVGLTNTQFDNLMKLGDAMNRQQLGIPYRKYRPYNI 320
Fly 321 PYKGHARDWWHFAITSILEEEVRKPRESWTWGHIKTHRERCNTYAQKYKEQCLSKKPSAVLTETC 385
Fly 386 RLLETELDVFNLLLIRQRVNIEIAK-----QREAV--PEQKSGWFSG-WGWGGGAKKDDQTTSQK 442
Fly 443 LVEKFEAAMTSEEKEKMYRAIGYQENAKPTDLPESYEAIRMNFKLIALEVGLYKDERNSSAATKD 507
Fly 508 FHELPSLVLLNFSMATALITQRPAAEAISIIAGMREIKVTGLTRNDYTPLLVESKITDEFNLLEV 572
Fly 573 FFETNPLDKLCDQRVKVVARPLQITYDAPTILALINAFQTPGDVTLSKFEDAASTKISNFKERSA 637
Fly 638 TGMQYMIDKKAVLDVDILLMPNILVVPHKGVYDAGNVSLLVVSMGQVHLSSQPRRESNKLQHLFS 702
Fly 703 AGEDKDEILKTVMENAYDRFTVAVDDVQMLVVRAGEPWQNALAEANSTEMHVLRPVSLKVTAALC 767
Fly 768 VVDNDPRLPNIKVDIDLPAILVNVSEDRIFLAIKVATSIPLPEQKEPAS---RLTQTNSRSSMSI 829
Fly 830 SNFINKEVKKIGPSASGSSASK---DPLLDEIIQYTSLDVNFSL----------GEINFVLFQSS 881
Fly 882 RKCETSPDVSIEFLTPDGDVLPSQLTENIQEPIEELPPTPPQQILSIDIRRLEAHFVSKTYESVA 946
Fly 947 TVKLGDINLRQYDCQDSDMDVLDVIYTPKQENSSNYLFTVSCTIADKSSPEFSTKYNSTEQLVVA 1011
Fly 1012 NFEVLQIVLHQECLQRIMEVVNNFQRNL---DLVLSSTRPRDRMGSIGGGDGIKRTLNVILEDTE 1073
Fly 1074 EIMTTDQMKRRKKTRRTHVVETVKVRVIANLDQVGLVLTGRKRPIAEMNVKKFVSSLIIKSSYTE 1138
Fly 1139 VNIGLKDIQVLDLNPYTIHKNILSIVGKDAFNCQIVIYNKEETQDYNSDDM-----KITVDIGCM 1198
Fly 1199 KIIFLNWFVAGVMNFLNNFTA-----AQATISQAGAAA---AESARQKAMDAYETATRMKLNIRI 1255
Fly 1256 KAPIIIVPIGSQDRNALLLDLGLLELTNNTVEVAVAEEERLAVIDEIKLQICDVKISKIVLLDGN 1320
Fly 1321 ESTVDEVDAEVGFLSKFNMMNPMSCTLSITRNLSYTWYRDVPELNLSGRLKSIELTLFADDYALV 1385
Fly 1386 MLVLNRNLNEGLEEFPPS--EEAPQ--EAQVRPERRNSRAGRL-SRTVQVSPIREKIHESIKFNF 1445
Fly 1446 QFDGVVINLMEGEGAGLARFGIY---FLSVKGTKLDN----------GTLSTSVVLCNIQMDDMR 1497
Fly 1498 SNSKSQIRQYLSRKDWVQPKLDTDEIIDACYNERN--FMVDVTAIIKEDDTFAEVRVRGFDLIVC 1560
Fly 1561 --IDFLLKLT-----TFLTLPPEENPRESVYIKPAPVSETARDTKHSIRSSAILAAQELVPVESS 1618
Fly 1619 SHEVPNRKMNLILHIDEPDIILVENLEDLNTSCIIFNAQVHLNYRSINDKQIVNGQIDALKMYMC 1683
Fly 1684 AFLPERREMTRHYILHPCVISLQ----GSTPEEEGMHI---SLKLSDIIINVSPATIELLNKAML 1741
Fly 1742 SVSSGTMTKCAIAEES-RNYSNLWHQHHFHSRTYWFTKVEQGVDALEAEQRSVSTDNEKQKTEKC 1805
Fly 1806 VIEIPSITLVIESGVGYYTKPLISLDTRITAVFNNWSRSLTAHGSLTLNMNYYNQALAEWEPIIE 1870
Fly 1871 LNEVIGRNGVREYTPWELKFEMGMEKVQSELEDDAEQQ-------AMHMNIHSAETLEITLSKTC 1928
Fly 1929 LGLLSELAEAFSQAIDQNGLTKPDIVAPYVLENDTGFDVNLNLRKGIFTLHEVHRGGTPVGANST 1993
Fly 1994 LLMVAQSEEVDPSVIKTCTISTGGRAYLQTKD------LSTLSEEDSEDYTLYVTIGDINKEIA- 2051
Fly 2052 -LPVSKSDTRFFNLMRSTSHEPWGIISEVKQEYGTTKVNIHGVVSVHNHFTTGLNIYRRNPAPTA 2115
Fly 2116 QCFEDIFVGRVRPGEVFHVPLHAIYAESKDLFFSMRGYRRSVQGISWASNPSDLNYSHQLHCDPT 2180
Fly 2181 NTFEPLIMNARR---------SKSEVYF------ENTNKYTLLSAF--------YTIHLRPPLYL 2222
Fly 2223 RNSLPINIQVSVAG-----CSVRKEDGLDAQSSQRF-VDRGYRKEDFLDYGEKPVNSGDVLHLPT 2281
Fly 2282 VRLASKGKESKSFLVVRLVQYLEKDWSCATEIWDYTDDVITWTFSSYDSEMKVDMDLYVKTENRH 2346
Fly 2347 GSLMLTLFSPFWMINKTGMMLTYKSETTSVEVLYHPPEYSGPILFTFRDKLFFDKKKASIRIDNG 2411
Fly 2412 QWSEKIPLDVAGSVGEVICFANNQKYPVGVHNHLTQNSLTKQITFIPFYIVCNKCHFDIELQEQS 2476
Fly 2477 RPADPWLHLEPNEMEPLWPRNDTKNNLVVRVDGKITP---AFDFTEVICTLLKLEDSKYGGINVD 2538
Fly 2539 VQTTEGGVYITFTDYKPADAPGLLINHTGKQIVYHEKGTKN--EHILNAKSTIMYAWDDPTGPKM 2601
Fly 2602 LVFGTNKEETDLKRDGIGEVIMQD--------GGKVLW-VSFLDGLQRVLLFTENESIANRTEST 2657
Fly 2658 ASLQSITQSIDLRIHGIGLSVINNETGLDILYLGVTSSGIIWESKKVTKNRFKELTINENALLEI 2722
Fly 2723 EYQKYLVHKSVNDVQTYKLDNKFPI-----DFDLMILKKTVERNLRRSFYPAIWLSRKSSPFQSQ 2782
Fly 2783 LHVKINRIQVDNQFLDPIFPVVLAPIPPPKSVASTTSLKPFIECSMVQRIMPNSTVRQFKYARIL 2847
Fly 2848 IQEFLFKVDLNFLTAIAEMFAK-EVSDEAAAKQFRQDVESIELPLSAFFEEHSL--EEQKSFYDN 2909
Fly 2910 LHLGPLKIHVSFSMA-----GSDTKALPGF-----LGSLVQGVGVTLTDVNDVVFRLAFFEREYQ 2964
Fly 2965 FFSQKQLINEITSHYTGQALKQLYVLVLGLDVLGNPYGLVVGLKKGVEDLFYEPFQGAIQGPGEF 3029
Fly 3030 AEGLVLGVKSLFGHTVGGAAGAVSKITGAMGKGLAALTFDEDYQKKRRQGIQNKPKNFHEGLARS 3094
Fly 3095 SKGLVMGFVDGVTGVVTKPVTGARDNGVEGFFKGLGKGAIGLVARPTAGVVDFASGSFEAVKRAA 3159
Fly 3160 DASEDVKRMRPPRFQHYDFVLRPYCLMEATGNKIMKETDKGKFATTDNFIHCEEIIQKSEYLVVT 3224
Fly 3225 NYRVMYVQRNEMFGVWTSLWSYLWNEISSVAATARGVQFTVKTDGKKVLGLFSSKESPRKLVLVA 3289
Fly 3290 DERKRDALVDIIESQRSDPNP 3310 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13 | NP_001260781.1 | Chorein_N | 4..113 | CDD:315323 | 60/108 (56%) |
VPS13 | 140..370 | CDD:318996 | 89/232 (38%) | ||
VPS13_mid_rpt | 574..807 | CDD:318998 | 70/232 (30%) | ||
SHR-BD | 2349..2600 | CDD:310922 | 84/255 (33%) | ||
VPS13 | <2701..3232 | CDD:330393 | 236/548 (43%) | ||
VPS13_C | 2904..3074 | CDD:318997 | 94/179 (53%) | ||
Vps13a | NP_001094445.2 | MRS6 | 4..>2005 | CDD:227376 | 612/2210 (28%) |
Chorein_N | 4..113 | CDD:289396 | 60/108 (56%) | ||
VPS13 | 142..371 | CDD:293513 | 89/232 (38%) | ||
VPS13_mid_rpt | 568..791 | CDD:293515 | 69/231 (30%) | ||
VPS13_mid_rpt | 1152..>1236 | CDD:293515 | 29/91 (32%) | ||
SHR-BD | 2202..2445 | CDD:284143 | 81/249 (33%) | ||
VPS13_C | 2759..2936 | CDD:293514 | 94/176 (53%) | ||
ATG_C | 2939..3018 | CDD:286423 | 41/78 (53%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 213 | 1.000 | Domainoid score | I2665 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H22068 | |
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG54975 | |
OrthoDB | 1 | 1.010 | - | - | D4159at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001282 | |
OrthoInspector | 1 | 1.000 | - | - | otm45459 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101020 | |
Panther | 1 | 1.100 | - | - | O | PTHR16166 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X990 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
11 | 10.930 |