Sequence 1: | NP_001260781.1 | Gene: | Vps13 / 35693 | FlyBaseID: | FBgn0033194 | Length: | 3321 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002934455.3 | Gene: | vps13b / 100490880 | XenbaseID: | XB-GENE-853604 | Length: | 4027 | Species: | Xenopus tropicalis |
Alignment Length: | 4304 | Identity: | 770/4304 - (17%) |
---|---|---|---|
Similarity: | 1371/4304 - (31%) | Gaps: | 1550/4304 - (36%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 VFEAVVADVLNKVLGDYIENLDRNQLKIGIWGGDVVLQNLKIRENALD-ELDLPVQLIYGYLGKL 65
Fly 66 VLKIPWKNLYSQPVIVNIEDLYVLVSPNNNVQYNAEK--EAKYEMDLKKAALDALEAARKKELEM 128
Fly 129 DQPKADAGFAEKLTAQIVNNLQVQITNVHLRY-EDTTTTGSPFSFGISLHELELYTTDCDWEKCY 192
Fly 193 MAQQASQVF--KIANLSCLSAYLNCGGQLYANNKSDLSQQFKTNIACK---ETKPNYNYVLGPIS 252
Fly 253 CNAKLKLNMNPELDDPPFEKPKIDLTLEMEKLNVGLTNTQ---FDNLMKLGDAM----------- 303
Fly 304 ----------------NRQQL--GIPYRKYRPYNIPYKGHARDW----WHF--AITSILEEEVRK 344
Fly 345 PRESWTWGHIKTHRERCNTYAQKYKEQCLSKKP---------SAVLTETCRLLETELDVFNLLLI 400
Fly 401 RQR---------VNIEIAKQRE-------------AV---------------------------- 415
Fly 416 --------------------PE-------------------------QKSGWF-----------S 424
Fly 425 GWG------WGGGAKKD----DQTTSQKLV-------------------------EKFEA----- 449
Fly 450 AMTSEEKEKM---------------------------------YRAIGY-------QENAKPTDL 474
Fly 475 PESYEAIR-----------MNF-----------------------------------KLIALEVG 493
Fly 494 L--------------------------------YKDERNSSAATKDFHELPSLVLLNFSMATALI 526
Fly 527 TQRPAAEAI--SIIAGMREIKVTGLTRNDYTPLLVESKITDEFNLLEVFFET------NPLD--- 580
Fly 581 --------KLCD-QRVKVVA---RPLQITYDAPTILA---LINAFQTPGDV----------TLSK 620
Fly 621 FEDAASTKISNFKERSATGMQYMIDKKAVL---------DVDILLMPNILVVPHK-----GVYDA 671
Fly 672 GNVSLLV---------VSMGQVHLSSQPRRESNKLQHLFSAGEDKDEILKTVMENAYDRFTVAVD 727
Fly 728 DVQMLVVRAG-EPWQNALAEANSTEMHVLRPVSLKVTAALCVV----DNDPRLPNIKVDIDLPAI 787
Fly 788 LVNVSEDR---------IFLAIKVATS--------------IPLPEQKEPASRLTQTNSRSSMSI 829
Fly 830 SNFINKE-----VKKIGPSA-----------SGSSASKDPLLDEIIQYTSLDVNFSLGEINF--- 875
Fly 876 ----------------VLFQSSRKCETS-----------------PDVSIEFLTPDGDVLPSQLT 907
Fly 908 ENIQEPIEELP----PTPPQQILSIDIRRLEAHFVSKTYESVATVKLGDIN----------LRQY 958
Fly 959 DCQDSDMDVLDVIYTP-----KQENSSNYLFT---------------VSCT-----------IAD 992
Fly 993 KSSP--EFSTKYNSTEQLVVANFEVLQIVLHQE----CLQRIMEVVNNFQRNLDLVLSSTRPRD- 1050
Fly 1051 RMGSIGGGDGIKRTLNVILEDTE------------------EIMTTDQMKRRKKT----RRTHVV 1093
Fly 1094 ETVKVRVIANLDQVGLVLTGRKRPIAEMNVKKFVSSLIIKSSYTE-------------------- 1138
Fly 1139 VNIGLKDIQVLDLNPYTIHKNILSIVGKD----AFNCQIVIYNKEETQDYNS--DDMKITVDIGC 1197
Fly 1198 MKIIFLNWFVAGVMNFLNNFTAAQATISQAGAAAAESARQKAMDAYETATRMKLNIRIKAPIIIV 1262
Fly 1263 PIGSQDRNALLLDLGLLELTNNTVEVAVAE----------------------------------- 1292
Fly 1293 --------------EERLAVIDE--IKLQICDVKISKIVLLDGNESTVD---------------- 1325
Fly 1326 -------EVDAEVGFLSKFNMMNPMSCTLSITRNLSYTWYRDVP-ELNLSG---RLKSIELTLFA 1379
Fly 1380 ---------DDYALVMLVLNRNLNEGLEEFP--------PSEE--APQEAQVRP-----ER---- 1416
Fly 1417 -RNSRAGRLSRTV------------QVSPIREKI-----------HESIKFNFQFDGVVINLMEG 1457
Fly 1458 EGAGLARFGIYFLSVKGTKLDNGTLSTSVVLCNIQMDDMRSNSKSQIRQYLSRKDWVQPKLDTDE 1522
Fly 1523 IIDACYNERNFMVDVTAIIKEDDTFAEVRVRGFDLIVCIDFLLKLTTFLT--------------- 1572
Fly 1573 -------LPPEENPRESVYIKPAPVSETA--RDT--------KHSIRSSAILAAQELVPVESS-- 1618
Fly 1619 ----------------SHEVPNRKMNLILHIDEPDIILVENLEDLNTSCIIFNAQVHLNYRSIND 1667
Fly 1668 KQIVNGQIDALKMYMCAFLPERREMTRHYILHPCVISLQGSTPEEEGMHISLKLSDIIINVSPAT 1732
Fly 1733 IELLNKAMLSVSSGTMTKCAIAEESRNYSNLWHQ--HHFHSRTYWFT------------------ 1777
Fly 1778 ---KVEQGVDALEAEQRSVSTDNEKQKTEKCVIEIPSITLVI-----ESGVGY----YTKPLISL 1830
Fly 1831 DTRITAV-FNNWSRSLTAHGSL------TLNMNYYNQALAEWEPIIELNEVIGRNGV--REYTPW 1886
Fly 1887 ELK-FEMGMEKVQSELEDDAEQQAMHMNIHSAETLEITLSKTCLGLLSELAEAFSQAIDQNGLTK 1950
Fly 1951 PDIVAPYVLENDTGFD-----------------VNLNLRKGIFTLHEVHRGGTPVGANSTLLMVA 1998
Fly 1999 QSEEVDPSVIKTCTIS-TGGRAYL-QTKDLSTLSEEDSEDYTLYVTIGDINKEIALPVSKSDTRF 2061
Fly 2062 F---NLMRSTSHEPWGIISEVKQEYGTTK-------------VNIHGVVSVHNHFTTGLNIYRRN 2110
Fly 2111 PAPTAQ---------C---FEDIFVGRVRPGEVFHVPLHAIYAESKDLFFSMRGYRR------SV 2157
Fly 2158 QGISWASNPSDLNYSHQLHCDPTNTFEPLIMNARRSKSEVYFENTNKYTLLSAFYTIHLRPPLYL 2222
Fly 2223 RNSLPINIQVSVAG----CSVRKED----------GLDAQSSQR-FVDRGYRKEDFLDYGEKPVN 2272
Fly 2273 SGDVLHLPTVRLASKGKESKSFLVVRLVQYLEKDWSCATEIWDYTDDVITWTFSSYDSEMKVDMD 2337
Fly 2338 LYVKTENRHGSLMLTLFSPFWM-------------------INKT----GMMLTYKSETTSVEVL 2379
Fly 2380 YH----------PPEYSGPILFTFRDKLFFDKKKASIRIDNGQWSEKIPLDVAGSVGEVICFANN 2434
Fly 2435 QKYPVGVHN--------HLTQ--------------NSLTKQITFIPFYIVCNKCHFDIELQEQSR 2477
Fly 2478 -----PADPWLHLEPNEMEPL-----WPRNDT--KNNLVVRVDGKITPAF---DFTEVICTLLKL 2527
Fly 2528 EDSKYGGINVDV---------------QTTEGGVYITFTDYKPADAPGLLINHTGKQIVYH---- 2573
Fly 2574 --EKGTKNEHI---------LN-------AKSTIMYAWD---------DPTGPKML--------- 2602
Fly 2603 --VFGTNKE--------ETDLKRDGIGEVIMQDGG-------------KVLWVSFL----DGLQR 2640
Fly 2641 V---------LLFTEN-------ESIANRTESTASL----------------QSITQSIDLRI-- 2671
Fly 2672 ------HGIGLSVINNETGLDILYLGVTSSGIIWESKKVTKNRFKELTINENA-----LLEIEYQ 2725
Fly 2726 KYLVHKSVNDVQTYKLDNKFPID------FDLMILKKTVERNLRRS----FY-----------PA 2769
Fly 2770 IWLSRK----SSPFQSQLHVKINRIQVDNQFLDPI---FPVVLAPIPPPKSV---------ASTT 2818
Fly 2819 SLKPFIECSMVQRIMP----------NSTVRQFKYARILIQEFLFKVDLNFLTAIAEMFAKEVSD 2873
Fly 2874 EAAAKQFRQDVESIELPLSAF-FE----EHSLEEQKSFYDNLHLGPLKIHVSFSMAGSDTKALPG 2933
Fly 2934 FLGSLVQGVGVTLTDVNDVVFRLAFFEREYQFFSQKQLINEITSHYTGQALKQLYVLVLGLDVLG 2998
Fly 2999 NPYGLVVGLKKGVEDLFYEPFQGAIQGPGEFAEGLVLGVKSLFGHTVGGAAGAVSKITGAMGKGL 3063
Fly 3064 AALTFDEDYQKKRRQGIQNKPKNFHEGLARSSKGLVMGFVDGVTGVVTKPV---------TGARD 3119
Fly 3120 NGVEGFFKGLGKGAIGLVARPTAGVVDFASGSFEAVKRAADASEDVK-RMRP---PRFQ----HY 3176
Fly 3177 DFVLRPYCLMEATG 3190 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13 | NP_001260781.1 | Chorein_N | 4..113 | CDD:315323 | 31/111 (28%) |
VPS13 | 140..370 | CDD:318996 | 57/273 (21%) | ||
VPS13_mid_rpt | 574..807 | CDD:318998 | 63/317 (20%) | ||
SHR-BD | 2349..2600 | CDD:310922 | 61/366 (17%) | ||
VPS13 | <2701..3232 | CDD:330393 | 123/564 (22%) | ||
VPS13_C | 2904..3074 | CDD:318997 | 41/169 (24%) | ||
vps13b | XP_002934455.3 | Chorein_N | 6..>94 | CDD:403729 | 28/87 (32%) |
SHR-BD | <2624..>2708 | CDD:399561 | 16/95 (17%) | ||
MRS6 | <3443..3862 | CDD:227376 | 102/447 (23%) | ||
VPS13_C | <3615..3736 | CDD:407143 | 34/125 (27%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1642 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.030 |