Sequence 1: | NP_001260781.1 | Gene: | Vps13 / 35693 | FlyBaseID: | FBgn0033194 | Length: | 3321 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012822629.1 | Gene: | vps13d / 100490091 | XenbaseID: | XB-GENE-923472 | Length: | 4384 | Species: | Xenopus tropicalis |
Alignment Length: | 4605 | Identity: | 839/4605 - (18%) |
---|---|---|---|
Similarity: | 1485/4605 - (32%) | Gaps: | 1679/4605 - (36%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 VFEAVVADVLNKVLGDYIENLDRNQLKIGIWGGDVVLQNLKIRENALDELDLPVQLIYGYLGKLV 66
Fly 67 LKIPWKNLYSQPVIVNIEDLYVLVSPNNNVQYNAEKEAKYEMDLKKAALDALEAARKKELEMDQP 131
Fly 132 KADAGFAEKLTA----QIVNNLQVQITNVHLRYEDTTTTGS-PFSFGISLHELELYTTDCDWEKC 191
Fly 192 YMAQQASQVFKIANLSCLSAYLNCGGQLYAN-------NKSDLSQQFKTNIACKETKPNYNYVLG 249
Fly 250 PISCNAKLKLNMNPELDDPPF---EKPKIDLTLEMEKLNVGLTNTQFDNLMKLGDAMNRQQLGIP 311
Fly 312 YRKYRPYNIPYKGHARDWWHFAITSILEEEVRKPRESWTWGHIKTHRERCNTYAQKYKEQCLSKK 376
Fly 377 PSAVLTETCRLLETELD------VFNLLLIRQRVNIEIAKQREAVPEQ----------------- 418
Fly 419 ----KSG-------WFSGW-GWGGGAKKDDQTTSQKLVEKFEAAMTSEEKEKMYRAIGYQENAKP 471
Fly 472 --------TDLPESYEAIRMNFKLIALEVGLYKDERNSSAATKDFHELPSLVLLNFSMATALITQ 528
Fly 529 RPAAEAISIIA------------------------GMREIKVTGLTRNDY---TPLLVESKIT-D 565
Fly 566 EFNLLEVFFETNPLDKLCDQRVKVVARPLQITYDAPTILALINAFQTPGDVTLSKF--------- 621
Fly 622 -EDAASTKISNFKERSATGMQYMIDKKAV-------------LDVDI--LLMPNILVVPHKGVYD 670
Fly 671 AGNVSLLVVSMGQVHL-SSQPRRESNKLQHLFSAGED-KDEILKT-------------------- 713
Fly 714 -------VMEN-----------AYDRFTVAVDDVQMLVVRAGEPWQNALAEANSTEMHVLRP--V 758
Fly 759 SLKVTAALCVVDNDPRLPNIKVDIDLPAILVNVSEDRIFLAIKVATSIPLPE------------- 810
Fly 811 --QKEPASRLTQTNSRSSMSI----------------------SNFINKEVKKIGPSAS-----G 846
Fly 847 SSAS--KDP-------------LLDEIIQYTS-LDV------NFSLGEINFVLFQSSRKCETSP- 888
Fly 889 -----------------------------------------------DVSIEFLTPDGDVLPSQL 906
Fly 907 T-ENIQEPIEELPPTPPQQILSIDIRRLEAHFVS---------KTYE------------------ 943
Fly 944 ------------SVATVKLG------------DIN----------LRQ----------------Y 958
Fly 959 DCQDSD-----------------MDVLDVIYTPK------------------------------- 975
Fly 976 --QENSSNYLFT----VSCTIADK--------------------------------SSPEFST-- 1000
Fly 1001 -----KYNS------------------TEQLVVANF--------------EVLQIVLHQ------ 1022
Fly 1023 -------------------------------------ECLQR----------------------- 1027
Fly 1028 -----------------IMEVVNNFQRNLDLVL-------------------------------- 1043
Fly 1044 -------SSTRPRDRMGSIG-----GGDGIKRTLN------------------------------ 1066
Fly 1067 ------------------------------------VILED------------------------ 1071
Fly 1072 -----------------------------TEEIMTTDQMKRR----------------------- 1084
Fly 1085 -----------------------------KK--------------------------TRRTHVV- 1093
Fly 1094 --------------------------------------ETVKVRVIANLDQVGLVLTGRKRPIAE 1120
Fly 1121 MNVKKFVSSLIIKSSYTEVNIGLK-DIQVLDLNPYTIHKNI----LSIVGKDAFNCQIVIYNKEE 1180
Fly 1181 TQDYNSDDMKITVDIGCMKIIFLNWFVAGVMNFLNNFTAAQATIS-QAGAAAAESARQKAMDAYE 1244
Fly 1245 TATRMKLNIRIKAPIIIVPIGSQDRNALLLDLGLLELTNNTVEVAVAE----------------- 1292
Fly 1293 ------------------------------------------------------------EERLA 1297
Fly 1298 VID--EIKLQICDVKISKIVLLDGNESTVDEVDAEVGFLSKF-----NMMNPMSC--TLSITRNL 1353
Fly 1354 SYTWYRDVPELNLSGRLKSIELTLFADDYALVMLVLNRNLNEGLEEFPPSEEAPQEAQVRPERRN 1418
Fly 1419 SRAGRLSRTVQVSPIREKIHESIKFNFQFDGVVINLMEGEGA-----GLARFGIYFLSVKGTKLD 1478
Fly 1479 NGTLSTSVVLCNIQMDDMRSNSKSQIRQYLSRKDWVQPKLDTDEII----DACYNERNFMVDVTA 1539
Fly 1540 IIKEDDTFAEVRVRGFDLIVCIDFLLKLTTFLTLPPEENPRESVYIKPAPVSETARDTKHSIRSS 1604
Fly 1605 AI--LAAQELVPVESSSHEVPNRKMNLILHIDEPDIILVENLEDLNTSCIIFNAQVHLNYRSIND 1667
Fly 1668 KQIVNGQIDALKMYMCAFLPERREMTRHYILHP--CVISLQGSTPEEE----------------- 1713
Fly 1714 -----GMHISLKLSDIII-------------------------------------NVSPA----- 1731
Fly 1732 ----------------------TIELLNKAMLSVSSGTMTKCAI-----AEESR-NYSNLWHQHH 1768
Fly 1769 FHSRTYWFTKVEQGVDALEAEQRSVSTDNEKQKTEKCVIEIPSITLVIESGVGYYTKPLISLDTR 1833
Fly 1834 ITAVFNNWSRSLTAHGSLTLNMNYYNQALAEWEPIIELNEVIGRNGVREYTPW------------ 1886
Fly 1887 -----ELKFEMGMEKV-----------------QSELEDDAEQQAMHMNIHSAETLEITLSKTCL 1929
Fly 1930 GLLSELA---------------EAFSQAIDQNGLTKPDIVAPYVLENDTGFDVNLNLRKGIFTLH 1979
Fly 1980 EVHRGGTPVGANSTLLMVAQSEEVDPSVIKTCTIST-----------GGRAYLQTKDLSTLSEED 2033
Fly 2034 SEDYTLY--------------VTIGDI--------------NKEIALPVSKSD----TRFFNLMR 2066
Fly 2067 STSHEPWGIISEVKQEYGTTK-VNIHGVVSVHNHFTTGLNIYRRNP-APTAQCFEDIFVGRVRPG 2129
Fly 2130 EVFHVPLHAIYAESKDLFFSMRGYRRSVQGISWASNP-------------SDLNYSHQLHCDPTN 2181
Fly 2182 TFEPLIMNARRSKSEVY--------FENTNKYTLLSAFYTIHLRPPLYLRNSLPINIQVSVAGCS 2238
Fly 2239 VR------KEDGL-DAQSSQRFVDRGYRKEDFLDYGEKPVNSGDVLHLPTVRLASKGKESKSFLV 2296
Fly 2297 VRLVQYLEKDWSCATEIWDYTDDVITWTFSSYDSEMKVDMDLYVKTENR-HGSLMLTLFSPFWMI 2360
Fly 2361 NKTGMMLTYKSETTSVEVLYHPPEYS-----GPILFTFRDKLFFDKKKASIRIDNGQWSEKIP-- 2418
Fly 2419 -----LDVAGSVGEVICFANNQK----YPVGVHNHLTQNSL--TKQITFIPFYIVCNKCHFDIEL 2472
Fly 2473 --------QEQSRPADPWLHLEPNEMEPLWPRNDTKNNLVVRVDGKITPAFDFTEVICTLLKLED 2529
Fly 2530 SKYGGINVDVQTTEGGVY--------------ITFTDYKPADAPGLLINHTGKQIVYHEKGTKNE 2580
Fly 2581 HI---LNAKSTIMYAWDDPTGPKMLVFGTNKEETDLKRDGIGEVI-----MQDGGKVLWVSFL-- 2635
Fly 2636 ----------DGLQRVLLFTENESIA--------------------------------------- 2651
Fly 2652 ---------NRTESTASL------------------------------QSITQS-------IDLR 2670
Fly 2671 IHGIGLSVINNETG--------------LDIL--------YL--------GVTSSGIIWESK--- 2702
Fly 2703 -KVT------KNRFKELTINE-NALLEIEYQKYLVHKSVNDVQT---------YKLDNKFPIDFD 2750
Fly 2751 LMILKKTVERNLRRSFYPAIWLSRKSSPFQSQLHVKINRIQVDNQFLDPIFPVVLAPIPPPKSVA 2815
Fly 2816 STTSLKPFIECSMVQRIMPNSTVRQFKYARILIQEFLFKVDLNFLTAIAEMFAKEVSDEAAAKQF 2880
Fly 2881 RQDVESIELPLSAFFEEHSLEEQKSFYDNLHLGPLKIHVSFSMAGSDTKALPGFLGSLVQGVGVT 2945
Fly 2946 LTDVNDVVFRLAFFEREYQFFSQKQLINEITSHYTGQALKQLYVLVLGLDVLGNPYGLVVGLKKG 3010
Fly 3011 VEDLFYEPFQGAIQGPGEFAEGLVL--GVKSLFGHTVGGAAGAVSKITGAMGKGLAALTFDEDYQ 3073
Fly 3074 KKRRQGIQNKPKNFHEGLARSSKGLVMGFVDGVTGVVTKPVTGAR-DNGVEGFFKGLGKGAIGLV 3137
Fly 3138 ARPTAGVVDFASGSFEAVKRAADAS---EDVKRMRPPRFQHYDFVLRPYCLMEATG-----NKIM 3194
Fly 3195 KETDKGKFATTDN-----FIHCEEIIQKSEYLVVTNYRVM-------YVQRNEMF 3237 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13 | NP_001260781.1 | Chorein_N | 4..113 | CDD:315323 | 37/108 (34%) |
VPS13 | 140..370 | CDD:318996 | 62/244 (25%) | ||
VPS13_mid_rpt | 574..807 | CDD:318998 | 61/299 (20%) | ||
SHR-BD | 2349..2600 | CDD:310922 | 61/293 (21%) | ||
VPS13 | <2701..3232 | CDD:330393 | 140/573 (24%) | ||
VPS13_C | 2904..3074 | CDD:318997 | 41/171 (24%) | ||
vps13d | XP_012822629.1 | MRS6 | 1..>1143 | CDD:227376 | 257/1195 (22%) |
VPS13 | 139..354 | CDD:374880 | 60/240 (25%) | ||
MRS6 | <2429..>3100 | CDD:227376 | 129/743 (17%) | ||
UBA_VP13D | 2644..2679 | CDD:270491 | 7/35 (20%) | ||
SHR-BD | 3274..3557 | CDD:369020 | 61/292 (21%) | ||
MRS6 | <3833..4294 | CDD:227376 | 131/522 (25%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D4159at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.920 |