DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpe and sgcE

DIOPT Version :10

Sequence 1:NP_610298.2 Gene:Rpe / 35692 FlyBaseID:FBgn0050499 Length:221 Species:Drosophila melanogaster
Sequence 2:NP_418721.1 Gene:sgcE / 948829 ECOCYCID:G7914 Length:210 Species:Escherichia coli


Alignment Length:199 Identity:61/199 - (30%)
Similarity:97/199 - (48%) Gaps:7/199 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PSILNADLSNLAAESQKL--LDNGADYLHLDVMDGTFVPNLTFGHPMVKSLRNKIKTAFFETHMM 71
            ||:.:|:..:...|...|  ||.|:  ||||:.|.:|:.|:|||...|:::..:.... ...|.|
E. coli     5 PSLASANPLHYGRELTALDNLDFGS--LHLDIEDSSFINNITFGMKTVQAVARQTPHP-LSFHFM 66

  Fly    72 VQNPEQWIEPMADAGVNLYTFHVEPVQDVVRVSRRVQESGMKVGLAIKPGTEVQDLEKYL-SIAD 135
            :..|::|...:|:........|.|.:.........::.:|.:.||...|.|.: |..:|| |..|
E. coli    67 LARPQRWFNALAEIRPAWIFVHAETLDYPSETLTEIRHTGARAGLVFNPATPI-DAWRYLASELD 130

  Fly   136 VVLVMTVEPGFGGQSFMADMMPKVKWLRENYPNLDIEVDGGVGPKTIHCCAEAGANMIVSGTAVV 200
            .|:|||.||...||.|:..|..|::.:|..:|..:...|||:........|.|||..:|.|.|:.
E. coli   131 GVMVMTSEPDGQGQRFIPSMCEKIQKVRTAFPQTECWADGGITLAAAQQLAAAGAQHMVIGRALF 195

  Fly   201 GASD 204
            .:||
E. coli   196 SSSD 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpeNP_610298.2 RPE 6..213 CDD:238244 61/199 (31%)
sgcENP_418721.1 PRK08005 1..210 CDD:169179 61/199 (31%)

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