DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpe and RPE1

DIOPT Version :9

Sequence 1:NP_001260780.1 Gene:Rpe / 35692 FlyBaseID:FBgn0050499 Length:221 Species:Drosophila melanogaster
Sequence 2:NP_012414.1 Gene:RPE1 / 853322 SGDID:S000003657 Length:238 Species:Saccharomyces cerevisiae


Alignment Length:231 Identity:111/231 - (48%)
Similarity:153/231 - (66%) Gaps:12/231 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VQAKIGPSILNADLSNLAAESQKLLDNGADYLHLDVMDGTFVPNLTFGHPMVKSLRNKI------ 61
            |:..|.||||.:|.:||..|..|:::.|||:||:|||||.||||:|.|.|:|.|||..:      
Yeast     2 VKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGDA 66

  Fly    62 ------KTAFFETHMMVQNPEQWIEPMADAGVNLYTFHVEPVQDVVRVSRRVQESGMKVGLAIKP 120
                  .||||:.||||:|||:|::..|..|.:.:|||.|..||.:.:.:.::..|:|...||||
Yeast    67 SNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKAACAIKP 131

  Fly   121 GTEVQDLEKYLSIADVVLVMTVEPGFGGQSFMADMMPKVKWLRENYPNLDIEVDGGVGPKTIHCC 185
            ||.|..|.:.....|:.||||||||||||.||.||||||:.||..:|:|:|:||||:|.:||...
Yeast   132 GTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVDGGLGKETIPKA 196

  Fly   186 AEAGANMIVSGTAVVGASDQSQVIKELRDVVHSYLK 221
            |:||||:||:||:|..|:|...||..:::.|...|:
Yeast   197 AKAGANVIVAGTSVFTAADPHDVISFMKEEVSKELR 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpeNP_001260780.1 RPE 6..213 CDD:238244 108/218 (50%)
RPE1NP_012414.1 PTZ00170 3..234 CDD:240303 110/230 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157341924
Domainoid 1 1.000 211 1.000 Domainoid score I502
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12005
Inparanoid 1 1.050 220 1.000 Inparanoid score I769
Isobase 1 0.950 - 0 Normalized mean entropy S332
OMA 1 1.010 - - QHG53606
OrthoFinder 1 1.000 - - FOG0002457
OrthoInspector 1 1.000 - - oto99124
orthoMCL 1 0.900 - - OOG6_100819
Panther 1 1.100 - - LDO PTHR11749
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1196
SonicParanoid 1 1.000 - - X1871
TreeFam 00.000 Not matched by this tool.
1413.880

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