DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpe and F08F8.7

DIOPT Version :9

Sequence 1:NP_001260780.1 Gene:Rpe / 35692 FlyBaseID:FBgn0050499 Length:221 Species:Drosophila melanogaster
Sequence 2:NP_498620.1 Gene:F08F8.7 / 176043 WormBaseID:WBGene00017272 Length:227 Species:Caenorhabditis elegans


Alignment Length:222 Identity:123/222 - (55%)
Similarity:163/222 - (73%) Gaps:4/222 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPVQAKIGPSILNADLSNLAAESQKLLDNGADYLHLDVMDGTFVPNLTFGHPMVKSLRNKI-KTA 64
            |.::..:.||||||||::||:|.:|||..|||:||||||||.||||||||||:|:|||..: ...
 Worm     1 MTLRPFVCPSILNADLASLASECKKLLAAGADWLHLDVMDGHFVPNLTFGHPVVESLRKSLGAEP 65

  Fly    65 FFETHMMVQNPEQWIEPMADAGVNLYTFHVEPVQDVVRVS---RRVQESGMKVGLAIKPGTEVQD 126
            ||:.|:||.||.||:||||.||.:.:|||.|.|...|.||   .::::|||||||::||||.|:.
 Worm    66 FFDVHLMVSNPGQWVEPMAKAGASQFTFHYEAVDGDVAVSELIEKIRKSGMKVGLSVKPGTSVEH 130

  Fly   127 LEKYLSIADVVLVMTVEPGFGGQSFMADMMPKVKWLRENYPNLDIEVDGGVGPKTIHCCAEAGAN 191
            :.|:.:..|..|:||||||||||.||.:||.||:.:|..||||.|:|||||.|:.|...|:||||
 Worm   131 ILKHANHLDNALIMTVEPGFGGQKFMENMMEKVRTIRSKYPNLTIQVDGGVTPENIEISAQAGAN 195

  Fly   192 MIVSGTAVVGASDQSQVIKELRDVVHS 218
            .|||||.::.|:|||..:..:|:.|.:
 Worm   196 AIVSGTGIIKAADQSVAMTTIRNAVEA 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpeNP_001260780.1 RPE 6..213 CDD:238244 120/210 (57%)
F08F8.7NP_498620.1 PTZ00170 1..226 CDD:240303 123/222 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160157331
Domainoid 1 1.000 233 1.000 Domainoid score I1357
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12005
Inparanoid 1 1.050 245 1.000 Inparanoid score I2050
Isobase 1 0.950 - 0 Normalized mean entropy S332
OMA 1 1.010 - - QHG53606
OrthoDB 1 1.010 - - D1554029at2759
OrthoFinder 1 1.000 - - FOG0002457
OrthoInspector 1 1.000 - - oto17576
orthoMCL 1 0.900 - - OOG6_100819
Panther 1 1.100 - - LDO PTHR11749
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1196
SonicParanoid 1 1.000 - - X1871
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.890

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