DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Corin and Corin

DIOPT Version :9

Sequence 1:NP_610297.2 Gene:Corin / 35691 FlyBaseID:FBgn0033192 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_058565.2 Gene:Corin / 53419 MGIID:1349451 Length:1113 Species:Mus musculus


Alignment Length:618 Identity:195/618 - (31%)
Similarity:293/618 - (47%) Gaps:88/618 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   779 CLPIIVRFCQGPQIPYNYTVFPNYIGHFGQLETQTDLDS--YEALVDVRCYELVSLFLCTLFVPK 841
            |.||.:..|.  .:|||:|.:|||:||..|.|.....:|  :.|||...||:.:..|.||:.|||
Mouse   523 CEPITLELCM--NLPYNHTHYPNYLGHRTQKEASISWESSLFPALVQTNCYKYLMFFACTILVPK 585

  Fly   842 CG-QSGATVPPCKTLCTETMRRCGFFFDVFGLSLPEYLNCKLFKDFPSSEDCVGL--DEVREVMR 903
            |. .:|..:|||:.||..:..||.....:.||..||..:|..|.:..|......|  ::|.|.  
Mouse   586 CDVNTGQRIPPCRLLCEHSKERCESVLGIVGLQWPEDTDCNQFPEESSDNQTCLLPNEDVEEC-- 648

  Fly   904 AATHPK------------CDG--------------------FQCDQNR-CLPQEYVCDGHLDCMD 935
            :.:|.|            |||                    ::|..|: ||....:|||..||.|
Mouse   649 SPSHFKCRSGRCVLGSRRCDGQADCDDDSDEENCGCKERALWECPFNKQCLKHTLICDGFPDCPD 713

  Fly   936 QADEAKCERCGPDEIYCGDSQCIGTKHICDGIIDCPYGQDERNCLRLSERNGDVGTGVLEVYRIG 1000
            ..||..|..|..:|:.|.:.:|:.....|||.:||....||..|:.|| :||: .:.:|.|::..
Mouse   714 SMDEKNCSFCQDNELECANHECVPRDLWCDGWVDCSDSSDEWGCVTLS-KNGN-SSSLLTVHKSA 776

  Fly  1001 QRQWMPACVKNWDRAVSPSAVCSILGYSAVNATSVL------TQLTHRPLLATVNVSTDIWKMYA 1059
            :...:  |...|...:|..| |..:|....:.|.::      ..|...|....:|.||       
Mouse   777 KEHHV--CADGWRETLSQLA-CKQMGLGEPSVTKLIPGQEGQQWLRLYPNWENLNGST------- 831

  Fly  1060 KRKSTLMQEFA----NCKKTEDYPMADLTCSNYECGRVKRGRHKPSRRIIGGTQASPGNWPFLAA 1120
                  :||..    :|....:   ..|.||..:|||  |...:.::||:||..:.||.||:..:
Mouse   832 ------LQELLVYRHSCPSRSE---ISLLCSKQDCGR--RPAARMNKRILGGRTSRPGRWPWQCS 885

  Fly  1121 ILGGPEKIFYCAGVLISDQWVLTASHCVGNYSVIDLEDWTIQLGVTRRNSFTYSGQKVKVKAVIP 1185
            :...|.. ..|..|||:.:||||.:||.....  |.:.|.:..|:...:..:...|...||.::.
Mouse   886 LQSEPSG-HICGCVLIAKKWVLTVAHCFEGRE--DADVWKVVFGINNLDHPSGFMQTRFVKTILL 947

  Fly  1186 HPQYNMAIAHDNDIALFQLATRVAFHEHLLPVCLPPPSVRNLHPGTLCTVIGWGKREDKDPKSTY 1250
            ||:|:.|:. |.||::.:|:..:....::.|||||.|. ..|.|.|.|.:.|||...:|.|    
Mouse   948 HPRYSRAVV-DYDISVVELSDDINETSYVRPVCLPSPE-EYLEPDTYCYITGWGHMGNKMP---- 1006

  Fly  1251 EYIVNEVQVPIITRNQCDEWLDNLTVSEGMVCAGFDDGGKDACQGDSGGPLLCPYPGEKNRWFVG 1315
             :.:.|.:|.||...||..:.|..|::..|:|||::.|..|:|.|||||||:|..||  .:|.:.
Mouse  1007 -FKLQEGEVRIIPLEQCQSYFDMKTITNRMICAGYESGTVDSCMGDSGGPLVCERPG--GQWTLF 1068

  Fly  1316 GIVSWGIMCAHPRL-PGVYANVVQYVPWIQEQI 1347
            |:.|||.:|....| ||||:||..:|.||:.||
Mouse  1069 GLTSWGSVCFSKVLGPGVYSNVSYFVGWIERQI 1101

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CorinNP_610297.2 CRD_FZ 778..894 CDD:143549 43/117 (37%)
LDLa 911..942 CDD:238060 14/51 (27%)
LDLa 945..979 CDD:238060 11/33 (33%)
SR 980..>1034 CDD:214555 12/53 (23%)
SRCR 992..1086 CDD:278931 18/103 (17%)
Tryp_SPc 1103..1343 CDD:214473 87/240 (36%)
Tryp_SPc 1104..1346 CDD:238113 88/242 (36%)
CorinNP_058565.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 176..202
CRD_corin_1 202..331 CDD:143554
LDLa 337..372 CDD:238060
LDLa 374..408 CDD:238060
Ldl_recept_a 415..445 CDD:278486
LDLa 455..482 CDD:238060
CRD_corin_2 522..643 CDD:143579 44/124 (35%)
Ldl_recept_a 648..682 CDD:278486 15/66 (23%)
LDLa <695..720 CDD:238060 7/24 (29%)
LDLa 723..757 CDD:238060 8/33 (24%)
SR 758..853 CDD:214555 24/104 (23%)
Tryp_SPc 868..1097 CDD:214473 83/225 (37%)
Tryp_SPc 869..1100 CDD:238113 83/224 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3577
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007867
OrthoInspector 1 1.000 - - oto94700
orthoMCL 1 0.900 - - OOG6_107940
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R11034
SonicParanoid 1 1.000 - - X4386
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.740

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