DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Corin and Sb

DIOPT Version :9

Sequence 1:NP_610297.2 Gene:Corin / 35691 FlyBaseID:FBgn0033192 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_001287355.1 Gene:Sb / 41958 FlyBaseID:FBgn0003319 Length:787 Species:Drosophila melanogaster


Alignment Length:371 Identity:107/371 - (28%)
Similarity:169/371 - (45%) Gaps:90/371 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1014 RAVSPSAVCSILGYSAVNATSVLTQLTHR-PLLATVNVSTDIWKMYAKRKSTLMQEFANCKKTED 1077
            |.:|.|:..|   ...|.::...||.||| |:|||..:.|:                    :..|
  Fly   469 RPISSSSSSS---SGIVTSSQRPTQPTHRTPVLATSGIETN--------------------EISD 510

  Fly  1078 YPMAD---------LTCSNYECGRVKRGRHKPSRRIIGGTQASPGNWPFLAAI----LGGPEKIF 1129
            ..:.|         ::.:..|||.....|  |..||:||..|:.|.||:..::    ..|.....
  Fly   511 SSIPDAGALGHVKTISAARSECGVPTLAR--PETRIVGGKSAAFGRWPWQVSVRRTSFFGFSSTH 573

  Fly  1130 YCAGVLISDQWVLTASHC------------VGNYSVIDLEDWT--IQLGVTRRNSFTYSGQKVKV 1180
            .|.|.||::.|:.||.||            ||.|....:::..  |:.||.::            
  Fly   574 RCGGALINENWIATAGHCVDDLLISQIRIRVGEYDFSHVQEQLPYIERGVAKK------------ 626

  Fly  1181 KAVIPHPQYNMAIAHDNDIALFQLATRVAFHEHLLPVCLPPPSVRNLHPGTLCTVIGWGKREDKD 1245
               :.||:|:. :.::.|:||.:|...:.|..|:.|:||  |...:|..|...||.|||:..:  
  Fly   627 ---VVHPKYSF-LTYEYDLALVKLEQPLEFAPHVSPICL--PETDSLLIGMNATVTGWGRLSE-- 683

  Fly  1246 PKSTYEYIVNEVQVPIITRNQC---------DEWLDNLTVSEGMVCAGFDDGGKDACQGDSGGPL 1301
             ..|...::.||.|||::.:.|         .|::.::     .:|||::.||:|:|||||||||
  Fly   684 -GGTLPSVLQEVSVPIVSNDNCKSMFMRAGRQEFIPDI-----FLCAGYETGGQDSCQGDSGGPL 742

  Fly  1302 LCPYPGEKNRWFVGGIVSWGIMCAHPRLPGVYANVVQYVPWIQEQI 1347
            ..  ..:..|:|:.||:||||.||...||||...:.::.|||.|.:
  Fly   743 QA--KSQDGRFFLAGIISWGIGCAEANLPGVCTRISKFTPWILEHV 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CorinNP_610297.2 CRD_FZ 778..894 CDD:143549
LDLa 911..942 CDD:238060
LDLa 945..979 CDD:238060
SR 980..>1034 CDD:214555 5/19 (26%)
SRCR 992..1086 CDD:278931 17/81 (21%)
Tryp_SPc 1103..1343 CDD:214473 82/266 (31%)
Tryp_SPc 1104..1346 CDD:238113 83/268 (31%)
SbNP_001287355.1 Tryp_SPc 543..782 CDD:214473 82/266 (31%)
Tryp_SPc 544..785 CDD:238113 83/268 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24253
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.