DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Corin and Np

DIOPT Version :9

Sequence 1:NP_610297.2 Gene:Corin / 35691 FlyBaseID:FBgn0033192 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_001246213.1 Gene:Np / 35904 FlyBaseID:FBgn0265011 Length:1041 Species:Drosophila melanogaster


Alignment Length:1054 Identity:223/1054 - (21%)
Similarity:362/1054 - (34%) Gaps:264/1054 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   405 PPVKGSSNSSNSIGETQSQSSKEPSS----VSASASTSSAASAGSST---------ISSGTMSSM 456
            |.:..:|...|:|.....:|:..|:|    ::..:|.||::|:||||         :.:.|.|.:
  Fly   135 PEINDNSIDQNTISHFSHESTTLPTSALFKLTTESSLSSSSSSGSSTAHHHTTNELLKNVTQSYL 199

  Fly   457 SGPCPAVVPPTD----AITKRPGPPEPPLRQANVFDPVETGSRGHPPPPLTV-------RNKLGR 510
            |...||.|..|.    :.|:|  ||.......|....|.|..:....|..|:       |.:...
  Fly   200 STAKPAPVRTTSNGTLSTTRR--PPLAHTTHKNSHYVVRTTMKPSAAPTTTITPTVKPPRRRTTT 262

  Fly   511 NKPPPITYPRMQQRQDSTLSSDSYSI-----SSSPGYN--SKLMEAPLLGSQQGGRKSNAPGSAQ 568
            .||...|.|.::||.::|.....:..     :::|...  :...|.....:::..|.:.:...|.
  Fly   263 AKPVLTTAPIVEQRIETTSVPTKFVTFQIVETTTPAVTEPTHQQETTTTTTRRHTRPTGSSSVAS 327

  Fly   569 RQTPLMDLAPTRFLGGAGGGTGSGKQGPAMPPPRSKINFRQDSTISSDSFSQTSSPGYNPKLMEA 633
            |.|.......|           :.....|.||          :|.|:.:.:.|..|  .|.|...
  Fly   328 RTTSKTTTTTT-----------TTTTTTAAPP----------TTTSTRAATTTQRP--TPPLRTT 369

  Fly   634 PLLP--SLSAKRLCSAPAPI----VCRQGVQ--HEPIEELEPPQTIS--------PLHKAAGQPS 682
            ...|  :.|::|...|..|:    ....|.|  .:|.:.|....|.:        |..:...|.|
  Fly   370 TSKPHKTHSSRRPAPAKKPVSTTTTTASGTQSTRKPADSLASGSTTANGTTATTLPARRPVTQTS 434

  Fly   683 SLQTIVRFQNGAPHTMSLQHQIINRRKSSNPYITNGRLKFRLFQI----------LINAFALLA- 736
            |..|..........|...:.::...|       |..||..|..|.          ::...|||| 
  Fly   435 SSSTTTTSTTSTITTTVFKDELPKNR-------TTTRLPERTTQAPRPRPKPTGEIVKVPALLAE 492

  Fly   737 -----IAGGLAAYFNAYP------TIKFVNKTIINTIHVEDTTSFGKNPAPGTCLPIIVRFCQGP 790
                 :..|.::..::.|      |...|.|....|.:...||:........|..|...|..:.|
  Fly   493 PTTTTVTKGSSSSSSSSPKPPASSTTPLVTKKKPTTTNAPTTTTTTTTTTTTTTTPKPTRRTKPP 557

  Fly   791 QIPYNYTVFPNYIGHFGQLETQTDLDSYEALVDVRCYELVSLFLCTLFVPKCGQSGATVPPCKTL 855
            ......|.            ..|...:...........|::                |.||....
  Fly   558 TTTTTTTT------------KATTTTTKATTTTTTAKPLIT----------------TEPPTSAP 594

  Fly   856 CTETMRRCGF--FFDVFGLSLPEYLNCKLFKDF----PSSEDCVGLDEVREVMRAATHPKCDGFQ 914
            .|.|.::.|.  :.||   ......|..:..|:    ||:                         
  Fly   595 LTTTTKKTGLITWTDV---EAEPPTNASISNDWQPAPPSN------------------------- 631

  Fly   915 CDQNRCLPQEYVCDGHLDCMDQADEAKCERCGPDEIYCGDSQCIGTKHICDGIIDCPYGQDERNC 979
                 .||..      .:..:.||:.......|.              ..|.::.          
  Fly   632 -----WLPLT------TESSETADKTSASTAPPS--------------ATDKVVI---------- 661

  Fly   980 LRLSERNGDVGTGVLEVYRIGQRQWMPACVKNWDRAVSPSAVCSILGYSAVNATSVLTQLTHRP- 1043
                    .|.|.|.||...|     |...:...:...||:.......:...||::: :.|..| 
  Fly   662 --------SVATSVSEVETHG-----PGKPQKTTKPPKPSSTAKPTTTTTAAATTIV-KTTEAPA 712

  Fly  1044 ----LLATVNVSTDIWKMYAKRKS----TLMQEFANCKKTEDY-------------------PMA 1081
                |.::.:..||:....|...|    |.........:|.||                   |..
  Fly   713 SSIELASSTSSYTDLGSDLAASSSSSTTTTTSSPTTAAETTDYSGEEPNTTTIEATGSTTVAPAN 777

  Fly  1082 DLTCSNYE--CGRVKRGRHKPSRRIIGGTQASPGNWPFLAAILGGPEKIFY--CAGVLISDQWVL 1142
            .|...:|:  |||    |..|..||:||..|:.|.||:..::.......:.  |...|:::.|.:
  Fly   778 ALEGVDYKEVCGR----RMFPEPRIVGGANAAFGRWPWQISLRQWRTSTYLHKCGAALLNENWAI 838

  Fly  1143 TASHCVGNYSVIDLEDWTIQLGV--TRRNSFTYSGQKVKVKAVIPHPQYNMAIAHDNDIALFQLA 1205
            ||:|||.|....||   .::||.  .......|..|:.:|:.|..|||::.. ..:.|:||.:..
  Fly   839 TAAHCVDNVPPSDL---LLRLGEYDLAEEEEPYGYQERRVQIVASHPQFDPR-TFEYDLALLRFY 899

  Fly  1206 TRVAFHEHLLPVCLPPPSVRNLHPGTLCTVIGWGKREDKDPKSTYEYIVNEVQVPIITRNQCDEW 1270
            ..|.|..:::|||:|......:  |....|.|||:..:..|..:   ::.||.||:|....|:..
  Fly   900 EPVIFQPNIIPVCVPDNDENFI--GQTAFVTGWGRLYEDGPLPS---VLQEVAVPVINNTICESM 959

  Fly  1271 LDNLTVSEGM----VCAGFDDGGKDACQGDSGGPLLCPYPGEKNRWFVGGIVSWGIMCAHPRLPG 1331
            ..:....|.:    :|||:..||.|:|:||||||::.....:| |:.:||::||||.||....||
  Fly   960 YRSAGYIEHIPHIFICAGWKKGGYDSCEGDSGGPMVLQRESDK-RFHLGGVISWGIGCAEANQPG 1023

  Fly  1332 VYANVVQYVPWIQE 1345
            ||..:.::..||.:
  Fly  1024 VYTRISEFRDWINQ 1037

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CorinNP_610297.2 CRD_FZ 778..894 CDD:143549 19/121 (16%)
LDLa 911..942 CDD:238060 4/30 (13%)
LDLa 945..979 CDD:238060 2/33 (6%)
SR 980..>1034 CDD:214555 10/53 (19%)
SRCR 992..1086 CDD:278931 22/121 (18%)
Tryp_SPc 1103..1343 CDD:214473 77/247 (31%)
Tryp_SPc 1104..1346 CDD:238113 78/250 (31%)
NpNP_001246213.1 Tryp_SPc 797..1035 CDD:214473 77/247 (31%)
Tryp_SPc 798..1038 CDD:238113 78/250 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24253
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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