DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Corin and fzd10

DIOPT Version :9

Sequence 1:NP_610297.2 Gene:Corin / 35691 FlyBaseID:FBgn0033192 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_570992.2 Gene:fzd10 / 30366 ZFINID:ZDB-GENE-990415-220 Length:580 Species:Danio rerio


Alignment Length:660 Identity:129/660 - (19%)
Similarity:207/660 - (31%) Gaps:232/660 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   774 PAPGTCLPIIVRFCQGPQIPYNYTVFPNYIGHFGQLETQTDLDSYEALVDVRCYELVSLFLCTLF 838
            |..|.|..|.:..|:  .|.||.||.||.:||..|.|....|..:..|::..|:..:..|||:|:
Zfish    30 PGEGRCQEIAIPLCK--DIGYNLTVMPNLMGHEDQNEAAIKLHEFAPLIEFGCHSHLKFFLCSLY 92

  Fly   839 VPKCGQSGAT-VPPCKTLCTETMRRCGFFFDVFGLSLPEYLNCKLFKDFPSSED----CV----- 893
            .|.|.:..:| :|.|:.:|.:..::|....:.|....||.|:|   ...|:..|    |:     
Zfish    93 APMCTEQVSTPIPACRVMCEQARQKCSPIMEQFNFHWPESLDC---SRLPNKNDPNYLCMEAPNN 154

  Fly   894 GLDEVREVMRAATHPKCDGFQCDQNRCLPQEYVCDGHLDCMDQADEAKCERCGPDEIYCGDSQCI 958
            |.||         .||....|...:|  |........|...::..:..|.  .|.:.:       
Zfish   155 GTDE---------PPKGSHTQSPDSR--PPRPGNSQELPIKERVGKTTCS--NPGKFH------- 199

  Fly   959 GTKHICDGIIDCPYGQDERNCLRLSERNGDVGTGVLEVYRIGQRQWMPACVKNWDRAVSPSAVCS 1023
                         |.|...:|......|.||      .:..|.:::....:..|      |.:|.
Zfish   200 -------------YVQKSESCAPKCYSNVDV------YWSQGDKRFSMVWIAIW------SILCF 239

  Fly  1024 ILGYSAVNATSVLTQL--------THRPLLATVNVSTDIWKMYAKRKSTLMQEFANCKKTEDYPM 1080
            |     .:|.:|||.|        ..||:: .:::|..::.:     ..|::.|...:       
Zfish   240 I-----SSAFTVLTFLIDPQRFKYPERPII-FLSMSYCVYSV-----GFLVRLFVGVE------- 286

  Fly  1081 ADLTCSNYECGR-------VKRGRHKPSRRIIGGTQASPGNWPFLAAILGGPEKIFYCAG----- 1133
                  |..|.|       ::.|.......|:           ||         |.|..|     
Zfish   287 ------NVACDRDTGVQYIIQEGLESTGCTIV-----------FL---------ILYYFGMASSL 325

  Fly  1134 --VLISDQWVLTASHCVG------NYSVIDLEDW------TIQLGVTRR------NSFTYSGQKV 1178
              |:::..|.|.|....|      |.|...|..|      ||.:.|.|:      ....|.| .:
Zfish   326 WWVILTLTWFLAAGKKWGHEAIEANSSYFHLAAWAIPAIKTIMILVMRKVAGDELTGVCYVG-SM 389

  Fly  1179 KVKA-----VIP--------------------HPQYNMAIAHDNDIALFQLATRVAFHEHLLPVC 1218
            .|||     :||                    |.:..|....:|...|.:|..|:.....|..| 
Zfish   390 DVKALTGFVLIPLSCYLIIGTSFLLSGFVALFHIRKVMKTEGENTDKLEKLMVRIGVFSVLYTV- 453

  Fly  1219 LPPPSVRNLHPGTLCTVIGW--------------GKREDKDPKSTYEYIVNEVQVPIITRNQCDE 1269
                      |.| |.:..:              |:::..|...:.|..|.:..:|.:.......
Zfish   454 ----------PAT-CVIACYFYERLNMDYWKILAGEQKCADDGKSGEECVMKSSIPAVEIFMVKI 507

  Fly  1270 WLDNLTVSEGMVCAGFDDG-------------------------GKDACQGDSGGPLLCPYP--- 1306
            ::        ::..|...|                         .|.||.....||.|.|:|   
Zfish   508 FM--------LLVVGITSGMWIWTSKTLQSWQNVFSRKLKKKTRRKAACVFTGSGPYLKPHPALK 564

  Fly  1307 GEKNRWFVGG 1316
            |.|.::...|
Zfish   565 GHKTKYEPAG 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CorinNP_610297.2 CRD_FZ 778..894 CDD:143549 36/125 (29%)
LDLa 911..942 CDD:238060 4/30 (13%)
LDLa 945..979 CDD:238060 3/33 (9%)
SR 980..>1034 CDD:214555 9/53 (17%)
SRCR 992..1086 CDD:278931 15/101 (15%)
Tryp_SPc 1103..1343 CDD:214473 55/306 (18%)
Tryp_SPc 1104..1346 CDD:238113 55/305 (18%)
fzd10NP_570992.2 CRD_FZ 31..157 CDD:382974 38/130 (29%)
7tmF_FZD10 217..535 CDD:320165 64/394 (16%)
TM helix 1 226..251 CDD:320165 8/35 (23%)
TM helix 2 260..281 CDD:320165 4/26 (15%)
TM helix 3 310..336 CDD:320165 8/45 (18%)
TM helix 4 353..369 CDD:320165 4/15 (27%)
TM helix 5 391..420 CDD:320165 5/28 (18%)
TM helix 6 440..467 CDD:320165 7/38 (18%)
TM helix 7 496..521 CDD:320165 3/32 (9%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3577
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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