DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Corin and Hpn

DIOPT Version :9

Sequence 1:NP_610297.2 Gene:Corin / 35691 FlyBaseID:FBgn0033192 Length:1397 Species:Drosophila melanogaster
Sequence 2:XP_038958880.1 Gene:Hpn / 29135 RGDID:61982 Length:559 Species:Rattus norvegicus


Alignment Length:486 Identity:134/486 - (27%)
Similarity:204/486 - (41%) Gaps:90/486 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   983 SERNGDVGTGVLEVYRIGQRQWMPACVKNWDRAVSPSAVCSILGYSAVN--ATSVLTQLTHRPL- 1044
            :|.....|..:|.|  .|.|. .|.|.:....|::...:..:.|..|.:  ..::|.:....|| 
  Rat    32 AEDQAGSGPSLLSV--AGGRT-APCCSRPKVAALTVGTLLFLTGIGAASWAIVTILLRSDQEPLY 93

  Fly  1045 ----------LATVNVSTDIWKMYAKRKSTLMQEFANCKK---------------------TEDY 1078
                      |..::.:...|::....:|........|::                     |..:
  Rat    94 QVQLSPGDSRLLVLDKTEGTWRLLCSSRSNARVAGLGCEEMGFLRALAHSELDVRTAGANGTSGF 158

  Fly  1079 --------PMAD----------------LTCSNYECGRVKRGRHKPSRRIIGGTQASPGNWPFLA 1119
                    |:|.                ||.:..:|||    |..|..||:||..:|.|.||:..
  Rat   159 FCVDEGGLPLAQRLLDVISVCDCPRGRFLTATCQDCGR----RKLPVDRIVGGQDSSLGRWPWQV 219

  Fly  1120 AILGGPEKIFYCAGVLISDQWVLTASHCVGNYSVIDLEDWTIQLGVTRRNSFTYSGQKVKVKAVI 1184
            ::  ..:....|.|.|:|..|||||:||....:.: |..|.:..|...|.|  ....::.|:|||
  Rat   220 SL--RYDGTHLCGGSLLSGDWVLTAAHCFPERNRV-LSRWRVFAGAVARTS--PHAVQLGVQAVI 279

  Fly  1185 PHPQY----NMAI-AHDNDIALFQLATRVAFHEHLLPVCLPPPSVRNLHPGTLCTVIGWGKREDK 1244
            .|..|    :..| .:.|||||..|::.:...|::.|||||... :.|..|.:|||.|||..:..
  Rat   280 YHGGYLPFRDPTIDENSNDIALVHLSSSLPLTEYIQPVCLPAAG-QALVDGKVCTVTGWGNTQFY 343

  Fly  1245 DPKSTYEYIVNEVQVPIITRNQCD--EWLDNLTVSEGMVCAGFDDGGKDACQGDSGGPLLCP--Y 1305
            ..::.   ::.|.:||||:...|:  ::..| .:...|.|||:.:||.||||||||||.:|.  .
  Rat   344 GQQAV---VLQEARVPIISNEVCNSPDFYGN-QIKPKMFCAGYPEGGIDACQGDSGGPFVCEDRI 404

  Fly  1306 PGEKNRWFVGGIVSWGIMCAHPRLPGVYANVVQYVPWIQEQIAKHSRPIKEDRVNKYDLHPGGPD 1370
            .| .:||.:.||||||..||..|.||||..|:.:..||.:.|.............:..|.||.|.
  Rat   405 SG-TSRWRLCGIVSWGTGCALARKPGVYTKVIDFREWIFQAIKASGDETLGTECWENRLRPGKPV 468

  Fly  1371 ILSKIATDPMREG-----APHHYTHSRTSSK 1396
            .||..:....|.|     .||....:..:|:
  Rat   469 ALSIDSLRSYRHGNSALTPPHRLLRAAPASR 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CorinNP_610297.2 CRD_FZ 778..894 CDD:143549
LDLa 911..942 CDD:238060
LDLa 945..979 CDD:238060
SR 980..>1034 CDD:214555 11/52 (21%)
SRCR 992..1086 CDD:278931 21/151 (14%)
Tryp_SPc 1103..1343 CDD:214473 92/248 (37%)
Tryp_SPc 1104..1346 CDD:238113 93/250 (37%)
HpnXP_038958880.1 Hepsin-SRCR 92..200 CDD:401275 14/111 (13%)
Tryp_SPc 204..441 CDD:238113 91/247 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.