DRSC/TRiP Functional Genomics Resources

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Protein Alignment Corin and Loxl2

DIOPT Version :9

Sequence 1:NP_610297.2 Gene:Corin / 35691 FlyBaseID:FBgn0033192 Length:1397 Species:Drosophila melanogaster
Sequence 2:XP_038949076.1 Gene:Loxl2 / 290350 RGDID:1308435 Length:823 Species:Rattus norvegicus


Alignment Length:586 Identity:121/586 - (20%)
Similarity:179/586 - (30%) Gaps:240/586 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   870 FGLSLPEYLNCKLFKDFPSS--EDCVGLDEVREVMRAATHPKCDGFQCDQNRCLPQEY------- 925
            :.|..|||     |:..|..  :..|..|.|:..:|.|      |.:...|....:.|       
  Rat    44 YQLQYPEY-----FQQPPPEHHQHQVPSDVVKIQVRLA------GQKRKHNEGRVEVYYEGQWGT 97

  Fly   926 VCD-------GHLDCMDQA-DEAK----CERCGP-------DEIYCGDSQCIGTKHICD----GI 967
            |||       .|:.|.:.. .|||    ....||       |.|||...:  .|...|.    |:
  Rat    98 VCDDDFSIHAAHVVCREVGYVEAKSWTASSSYGPGEGPIWLDNIYCTGKE--STLAACSSNGWGV 160

  Fly   968 IDCPYGQDE----------------------------------RNCLRLSERNGDVGTGVLEVYR 998
            .||.:.:|.                                  |..|........|..|.:||..
  Rat   161 TDCKHTEDVGVVCSEKRIPGFKFDNSLINQIESLNIQVEDIRIRPILSAFRHRKPVTEGYVEVKE 225

  Fly   999 IGQRQWMPACVKNWDRAVSPSAVCSILGYSAVNATSVLTQLTHRPLLATVNVSTDIWKMYAKRKS 1063
              .:.|...|.|:| .|.:...||.:.|:.|        :.|:.|         ..:|.:|.|:.
  Rat   226 --GKAWKQICDKHW-TAKNSHVVCGMFGFPA--------EKTYNP---------KAYKTFASRRK 270

  Fly  1064 TLMQEFA-NCKKTEDY-------------PMADLTCSNYECGRVK---------------RGRHK 1099
            ....:|: ||..||.:             |:.:.||.|.:...|.               |..:|
  Rat   271 LRYWKFSMNCTGTEAHISSCKLGPPMFRDPVKNATCENGQPAVVSCVPSQIFSPDGPSRFRKAYK 335

  Fly  1100 PSR----------RIIGGTQASPGNWPFLAAILGGPEKIFYCAGVLISDQWVLTASHCVGNYSVI 1154
            |.:          |:.||.|...|.    ..:|...|     .|.:..|:|.|.::      ||:
  Rat   336 PEQDHVSLQQPLVRLRGGAQVGEGR----VEVLKNGE-----WGTVCDDKWDLVSA------SVV 385

  Fly  1155 DLEDWTIQLGV-TRRNSFTYS--GQKVKVKAVIPHPQYNMAIAHDNDIALFQLATRVAFHEHLLP 1216
            ..|     ||. |.:.:.|.|  ||.:..       :|...                   :|.:|
  Rat   386 CRE-----LGFGTAKEAVTGSRLGQGIGW-------EYTEG-------------------KHGIP 419

  Fly  1217 VCLPPPSVRNLHPGTLCTVIGWGKREDKDPKSTYEYIVNEVQVPIITRNQCDEWLD------NLT 1275
            ..|    :.....|:.||.||             ...:||||.....::..|..|:      |..
  Rat   420 ALL----LGKASSGSECTGIG-------------PIHLNEVQCTGTEKSIIDCKLNTESQGCNHE 467

  Fly  1276 VSEGMVC----AGFD-----DGGKDACQGDSGGPLLCPYPG------EKNRWFVGGIV---SWGI 1322
            ...|:.|    .||.     :||::            ||.|      |:|...|.|.|   :|||
  Rat   468 EDAGVRCNIPIMGFQKKVRLNGGRN------------PYEGRVEVLTERNGSLVWGNVCGQNWGI 520

  Fly  1323 M 1323
            :
  Rat   521 V 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CorinNP_610297.2 CRD_FZ 778..894 CDD:143549 6/25 (24%)
LDLa 911..942 CDD:238060 11/49 (22%)
LDLa 945..979 CDD:238060 13/78 (17%)
SR 980..>1034 CDD:214555 14/53 (26%)
SRCR 992..1086 CDD:278931 24/107 (22%)
Tryp_SPc 1103..1343 CDD:214473 54/248 (22%)
Tryp_SPc 1104..1346 CDD:238113 53/247 (21%)
Loxl2XP_038949076.1 SR 73..174 CDD:214555 25/108 (23%)
SR 216..316 CDD:214555 28/119 (24%)
SR 348..475 CDD:214555 38/189 (20%)
SR 485..593 CDD:214555 13/49 (27%)
Lysyl_oxidase 598..797 CDD:395944
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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