DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Corin and f12

DIOPT Version :10

Sequence 1:NP_610297.2 Gene:Corin / 35691 FlyBaseID:FBgn0033192 Length:1397 Species:Drosophila melanogaster
Sequence 2:XP_017947702.2 Gene:f12 / 100493769 XenbaseID:XB-GENE-1004811 Length:597 Species:Xenopus tropicalis


Alignment Length:638 Identity:158/638 - (24%)
Similarity:228/638 - (35%) Gaps:202/638 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   840 PKCGQSGATVPPCKTLCTETMRRCGFFFDVFGLSL-----------PEYLNCKLFKDFPSSED-- 891
            ||.|.          :.||:.:.|.|.|. :|..|           |... |.|.|::...:.  
 Frog    33 PKSGY----------VLTESGQLCHFPFQ-YGRMLHNSCIKIGKHGPRKW-CSLTKNYDRDQSWS 85

  Fly   892 -CVGLDEVREVMRAATHPKCDGFQCDQNRCLPQEYVCDGHLDCMDQADEAKCERCGPDEIY---- 951
             ||...||.:             .|:.:.|.|:. ||:..|         |...|...|.|    
 Frog    86 YCVEGHEVHD-------------HCENDPCKPRG-VCESTL---------KGYHCVCKEPYTGKH 127

  Fly   952 CGDSQCIGTKHICDGIIDCPYGQDERNCLRLS----ERNGDVGTGV---------------LEVY 997
            |...:|...|.:       .|...:...||.|    |:.|....||               |...
 Frog   128 CQTDKCFDKKSL-------QYFNPKDEWLRYSPPVLEKCGCTEKGVVCKQTHGMACSKNLCLHGG 185

  Fly   998 RIGQRQWMPACVKNWDRAVSPSAV---CSI-----------LGYSAVNATSV------------- 1035
            |..|...|.||      ..||..:   |.|           :||.....|:|             
 Frog   186 RCIQHNKMTAC------GCSPGFIGTHCEIHQKETCYTGNGIGYRGTGNTTVSGAPCLHWDSDII 244

  Fly  1036 -------------LTQLTHRPLLATVNVSTDIWKMYAKRKSTLMQE---FANC------------ 1072
                         :..:...|.....:..|..| .:..::..|..|   ...|            
 Frog   245 EHEVSMYGGHRGKVHGIDSHPYCRNPDGDTQPW-CFVMKEQRLSWEHCLIPRCTQLAGTTAPPKV 308

  Fly  1073 ------KKTEDYPMADLTCSN-------------YECGRVKRGRHKPS--RRIIGGTQASPGNWP 1116
                  .|:.::..:..:.||             .:|||  :.:..||  .||:||..|.|.:.|
 Frog   309 TKTPSPTKSSNHSASTPSPSNDTQGPVDGRIDLPVDCGR--KFQKTPSIMPRIVGGLVALPASHP 371

  Fly  1117 FLAAILGGPEKIFYCAGVLISDQWVLTASHCVG---NYSVIDLEDWTIQLGVTRRNSFTYSGQKV 1178
            ::||:.....   :|.|.|||..|::||:||:.   |.:.|     ::.||.:|.|:.......:
 Frog   372 YIAALYIDNH---FCGGSLISPCWIVTAAHCLDQRPNVTKI-----SVVLGQSRFNTTDQHTVTL 428

  Fly  1179 KVKAVIPHPQ-YNMAIAHDNDIALFQLAT-----RVAFHEHLLPVCLPPPSVRNLHPGTLCTVIG 1237
            .|:..|.|.: |...:.|  ||||.::.:     ...|.:.:.|:|| |...:.......|.|.|
 Frog   429 LVEKYILHEKYYGDTLQH--DIALVKVKSINGLCASEFSQFVQPICL-PQQFKMAESTKQCVVAG 490

  Fly  1238 WGKREDKDPKSTYEYIVNEVQVPIITRNQC-------DEWLDNLTVSEGMVCAGFDDGGKDACQG 1295
            ||  ...:....|.:.:.|..:|||...||       |..|      .||:||||.:||.|||||
 Frog   491 WG--HQYEGAEHYAFFLQEASMPIIPYTQCQSPSVHGDRML------PGMLCAGFMEGGVDACQG 547

  Fly  1296 DSGGPLLCPYPGEKNRWFVGGIVSWGIMCAHPRLPGVYANVVQYVPWIQEQIA 1348
            ||||||:|...|   |..:.|:||||..||....||||..|..|..||:..|:
 Frog   548 DSGGPLVCEVDG---RIELHGVVSWGSGCAEENKPGVYTAVTSYTDWIRANIS 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CorinNP_610297.2 CRD_FZ 778..894 CDD:143549 15/67 (22%)
LDLa 911..942 CDD:238060 6/30 (20%)
LDLa 945..979 CDD:238060 7/37 (19%)
SR 980..>1034 CDD:214555 19/86 (22%)
Tryp_SPc 1104..1346 CDD:238113 89/257 (35%)
f12XP_017947702.2 FN2 40..87 CDD:238019 11/48 (23%)
EGF_CA 95..129 CDD:238011 10/56 (18%)
KR 213..298 CDD:214527 10/85 (12%)
Tryp_SPc 359..595 CDD:238113 89/257 (35%)

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