DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Corin and Fzd7

DIOPT Version :9

Sequence 1:NP_610297.2 Gene:Corin / 35691 FlyBaseID:FBgn0033192 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_001258114.1 Gene:Fzd7 / 100360552 RGDID:2321905 Length:572 Species:Rattus norvegicus


Alignment Length:161 Identity:50/161 - (31%)
Similarity:71/161 - (44%) Gaps:17/161 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   734 LLAIAGGLAAYFNAYPTIKFVNKTIINTIHVEDTTSFGKNPAPGTCLPIIVRFCQGPQIPYNYTV 798
            :||:.|.|.....|.|            .|.|...|.   |..|.|.||.:..|  ..|.||.|:
  Rat    19 VLALLGALPTDTGAQP------------YHGEKGISV---PDHGFCQPISIPLC--TDIAYNQTI 66

  Fly   799 FPNYIGHFGQLETQTDLDSYEALVDVRCYELVSLFLCTLFVPKCGQSGATVPPCKTLCTETMRRC 863
            .||.:||..|.:...::..:..||.|:|...:..|||:::.|.|......:|||::||....:.|
  Rat    67 LPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELRFFLCSMYAPVCTVLDQAIPPCRSLCERARQGC 131

  Fly   864 GFFFDVFGLSLPEYLNCKLFKDFPSSEDCVG 894
            ....:.||...||.|.|:.|....:.|.|||
  Rat   132 EALMNKFGFQWPERLRCENFPVHGAGEICVG 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CorinNP_610297.2 CRD_FZ 778..894 CDD:143549 37/115 (32%)
LDLa 911..942 CDD:238060
LDLa 945..979 CDD:238060
SR 980..>1034 CDD:214555
SRCR 992..1086 CDD:278931
Tryp_SPc 1103..1343 CDD:214473
Tryp_SPc 1104..1346 CDD:238113
Fzd7NP_001258114.1 CRD_FZ7 45..169 CDD:143575 40/120 (33%)
7tmF_FZD7 241..571 CDD:320374
TM helix 1 251..275 CDD:320374
TM helix 2 284..305 CDD:320374
TM helix 3 335..357 CDD:320374
TM helix 4 378..394 CDD:320374
TM helix 5 416..439 CDD:320374
TM helix 6 470..492 CDD:320374
TM helix 7 521..546 CDD:320374
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3577
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.