DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Corin and fzd3

DIOPT Version :9

Sequence 1:NP_610297.2 Gene:Corin / 35691 FlyBaseID:FBgn0033192 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_001123382.1 Gene:fzd3 / 100038082 XenbaseID:XB-GENE-484322 Length:664 Species:Xenopus tropicalis


Alignment Length:755 Identity:156/755 - (20%)
Similarity:234/755 - (30%) Gaps:295/755 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   779 CLPIIVRFCQGPQIPYNYTVFPNYIGHFGQLETQTDLDSYEALVDVRCYELVSLFLCTLFVPKCG 843
            |.||.:|.||  .:|||.|..||.:.|:.|......::.:..:|::.|......|||.|:.|.|.
 Frog    27 CEPITLRMCQ--DLPYNSTFMPNLLNHYDQQTAALAMEPFHPMVNLECSRDFRPFLCALYAPVCM 89

  Fly   844 QSGATVPPCKTLCTETMRRCGFFFDVFGLSLPEYLNCKLFKD----FPSSEDCVGLDEVREVMRA 904
            :.|....||:.||......|....::||:..||.:.|..|.|    :|...|.....:|.|....
 Frog    90 EYGRVTLPCRKLCQRAYNECFKLMEMFGVPWPEEMECSRFPDCDEPYPRMVDISLSGDVTEETPL 154

  Fly   905 ATHPKCDGFQCDQNRCLPQEYVCDGHLDCMDQADEAKCERCGPDEIYCGDSQCIGTKHICDGIID 969
            |.. :..||.|      |:|...|                  ||         :|...:  |:.|
 Frog   155 AVQ-RDYGFWC------PRELKID------------------PD---------LGYSFL--GVRD 183

  Fly   970 ----CPYGQDERNCLRLSERNGDVGTGVLEVYRIGQRQWMPACVKNWDRAVSPSAVCSILGYSAV 1030
                ||:....|..|..:.            |.||                    |.||:..||.
 Frog   184 CSPPCPHMYFRREELSFAR------------YFIG--------------------VISIVCLSAT 216

  Fly  1031 NAT--SVLTQLT-----HRPLLATVNVSTDIWKMYAKRKSTLMQEFANCKKTEDYPMADL----- 1083
            ..|  :.|..:|     .||::.                      :|.|     |.|..|     
 Frog   217 LFTFLTFLIDVTRFRYPERPIIF----------------------YAVC-----YMMVSLIFFIG 254

  Fly  1084 -------TC-----SNYECGRVKRGRHKPSRRII-----GGTQASPGNWP------FLAAI-LGG 1124
                   .|     |.|:...|.:|.|..:..::     ..|.|....|.      ||||: ..|
 Frog   255 FLLEDKVACNGANPSQYKAATVTQGSHNKACTMLFMVLYFFTMAGSVWWVILTITWFLAAVPKWG 319

  Fly  1125 PEKIFYCAGVLISDQW--------VLTASH----------C-VGNYSVIDLEDWT-------IQL 1163
            .|.|...|.:..:..|        :|.|.:          | ||.|.|..|..:.       :.:
 Frog   320 SEAIEKKALLFHASAWGIPGTLTIILLAMNKIEGDNISGVCFVGLYDVQALRYFVLAPLCLDVVV 384

  Fly  1164 GVTRRNSFTYSGQKVKVKAVIPHPQYNMAIAHDNDIALFQLATRVAFHE--HLLPVCLPPPSVRN 1226
            ||:...:...|..:|:::  ||       :..:|...|.:...|:....  :|:|          
 Frog   385 GVSLLLAGIISLNRVRIE--IP-------LEKENQDKLVKFMIRIGVFSILYLVP---------- 430

  Fly  1227 LHPGTLCTVIG---------------WGKREDKDPKSTYEYIVNE------------------VQ 1258
                 |..|||               |.:...|:......|.|.:                  |.
 Frog   431 -----LLVVIGCYFYEQAYRGVWETTWVQERCKEYHIPCPYKVTQTSRPDLILFLMKYLMALVVG 490

  Fly  1259 VPII----TRNQCDEWLDNLTVSEGMVCAGFDDGGK---------------DACQG---DSGGPL 1301
            :|.:    ::..|.||            |.|..|.|               |..|.   |...|:
 Frog   491 IPSVFWVGSKKTCFEW------------ASFFHGRKKKAGVNESRQVLQEPDFAQSLLRDPNTPI 543

  Fly  1302 LCPYPGEKNRWFVGGIVSWGIMCAHPRLPGVYANVVQYVPWIQEQIAK----HSRPIKEDRVNKY 1362
            :     .|:|    |..:.|        ...:|:..| :..:.:|.:|    ||      :|:.|
 Frog   544 V-----RKSR----GTSTQG--------TSTHASSTQ-LAMLDDQRSKAGSVHS------KVSSY 584

  Fly  1363 --DLHPGGPDILSKIATDPMREGAPH----HYT-HSRTSS 1395
              .||.......:..:...|.|..||    |.| |||.||
 Frog   585 HGSLHRSRDGRYTPCSYRGMEERLPHGSLSHLTDHSRHSS 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CorinNP_610297.2 CRD_FZ 778..894 CDD:143549 37/118 (31%)
LDLa 911..942 CDD:238060 6/30 (20%)
LDLa 945..979 CDD:238060 8/37 (22%)
SR 980..>1034 CDD:214555 10/55 (18%)
SRCR 992..1086 CDD:278931 19/117 (16%)
Tryp_SPc 1103..1343 CDD:214473 58/334 (17%)
Tryp_SPc 1104..1346 CDD:238113 58/336 (17%)
fzd3NP_001123382.1 CRD_FZ3 23..149 CDD:143558 37/123 (30%)
7tmF_FZD3 191..511 CDD:320161 72/414 (17%)
TM helix 1 200..225 CDD:320161 9/56 (16%)
TM helix 2 234..255 CDD:320161 7/47 (15%)
TM helix 3 286..312 CDD:320161 3/25 (12%)
TM helix 4 329..351 CDD:320161 3/21 (14%)
TM helix 5 365..390 CDD:320161 5/24 (21%)
TM helix 6 418..443 CDD:320161 7/39 (18%)
TM helix 7 472..497 CDD:320161 2/24 (8%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.