DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Orc1 and Cdc6

DIOPT Version :9

Sequence 1:NP_477303.1 Gene:Orc1 / 35686 FlyBaseID:FBgn0286788 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_001101768.1 Gene:Cdc6 / 360621 RGDID:1309157 Length:561 Species:Rattus norvegicus


Alignment Length:624 Identity:159/624 - (25%)
Similarity:262/624 - (41%) Gaps:151/624 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   345 KTPSNDMKIKLRLSERRRSVRLASMDVDPLSLEEAVQEPNAQGRKRLGVANGDIYHTPTKKSKEP 409
            ||.|.|.::|||..:...:...|.:.:.|||           .|||||  :.::.:||......|
  Rat    25 KTNSRDSEVKLRNVQPVPTTPCADIKILPLS-----------PRKRLG--DDNLCNTPHLSPCSP 76

  Fly   410 LESAAATEQTPSTRRKSILKSATSRLAEGTPRRSIHLSNIVEQRVFEDDEI---ISTPKRGRSKK 471
                      |...||.          .|.||......    .|:..|||:   .|.||      
  Rat    77 ----------PKLGRKE----------NGPPRSHTRKG----CRLIFDDELAVKASAPK------ 111

  Fly   472 TVQDNDEDYSPKKSVQKTPTRTRRSSTTTKTATTPSKGITTATATPMTPSQKMKKIRAGELSPSM 536
                 ::|..|:..:..:..|.:.|.|                    .|.||..           
  Rat   112 -----EQDRVPQHQILSSAQRGQESET--------------------NPEQKCP----------- 140

  Fly   537 QQRTDLPAKDSSKSEL--------QLAREQLHVSVVPKSLPCREREFENIYAFLEGKIQDQCGGC 593
                  |.|:|:...|        |.|:..|: :.||..||.||:|...|..||:..|..:..|.
  Rat   141 ------PEKESACMRLFKQEGTCYQQAKLVLN-TAVPDRLPAREQEMGVIRDFLKEHICGKKAGS 198

  Fly   594 MYVSGVPGTGKTATVTGVIRTLQRMAKQNELPAFEYLEINGMRLTEPRQAYVQIYKQL------- 651
            :|:||.|||||||.::.:::..::     |:..|:.:.:|.|.|...:..:..|.:::       
  Rat   199 LYLSGAPGTGKTACLSRILQDFKK-----EVKGFKTIVLNCMSLRNAQAVFPAIAQEIGREELCR 258

  Fly   652 -TGKTVSWEQAHALLEKRFTTPAPRRVTTVLLVDELDILCNRRQDVVYNLLDWPTKSAAKLVVVT 715
             |||.:..:     |||..|  |.|....||::||:|.|.::.|||:|.|.:||..|.::||::.
  Rat   259 PTGKDLMRK-----LEKHLT--AERGPMIVLVLDEMDQLDSKGQDVLYTLFEWPWLSNSRLVLIG 316

  Fly   716 IANTMDLPERLLMGKVTSRLGL--TRLTFQPYSHKQLQEIVTARLGGSETFKGE-----AVQLVA 773
            ||||:||.:|:| .::.:|.|.  ..|.|.||:..|:..|:..||  |:..|.:     |:|..|
  Rat   317 IANTLDLTDRIL-PRLEAREGCKPKLLNFPPYTRNQIAAILQDRL--SQVSKDQVLDSAAIQFCA 378

  Fly   774 RKVAAVSGDARRALDICRRATEI--------------------ADTAAVKCVTMLHVQQALAEMI 818
            |||:|||||.|:|||:||||.||                    .::...|.|.:.|:.|.::.:.
  Rat   379 RKVSAVSGDIRKALDVCRRAIEIVESDVRSQTVLKPLSECKSPCESLVPKRVGLAHISQVISGVD 443

  Fly   819 ASAKVQAIRNCS----RMEQIFLQAIAAEVTRTGVEETTFMGVYQQVETIAAFMGVTFPPPGRAL 879
            .:....:..|..    ..::|.:.::.....|..::|.|...:|:...::.....|........|
  Rat   444 GNRVTLSQENTQDSLPLQQKILVCSLLLLTKRLKIKEVTLGKLYEAYSSVCRKQQVAAVDQSECL 508

  Fly   880 RLCSKLGAERLIISEHSRNDLFQKILLNVSADDIHYALR 918
            .|...|.:..::..:.::.....|:.|.:...:|.:.|:
  Rat   509 SLSGLLESRGIVGLKKNKESRLTKVSLKIEEKEIEHVLK 547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Orc1NP_477303.1 BAH_Orc1p_animal 44..185 CDD:240070
AAA 591..741 CDD:214640 52/159 (33%)
AAA 594..739 CDD:278434 51/154 (33%)
Cdc6_C 837..917 CDD:215013 11/79 (14%)
Cdc6NP_001101768.1 CDC6 169..547 CDD:224391 111/392 (28%)
AAA_22 196..327 CDD:290137 48/142 (34%)
Cdc6_C 466..546 CDD:215013 11/79 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1474
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D427050at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100406
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.720

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