DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1602 and Prdm5

DIOPT Version :9

Sequence 1:NP_610291.2 Gene:CG1602 / 35684 FlyBaseID:FBgn0033186 Length:577 Species:Drosophila melanogaster
Sequence 2:XP_038964622.1 Gene:Prdm5 / 689788 RGDID:1588700 Length:599 Species:Rattus norvegicus


Alignment Length:613 Identity:137/613 - (22%)
Similarity:218/613 - (35%) Gaps:168/613 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PTDVEVAQWQEFVLHIRNVHSKVRSMEDDFEPVGENSTESGHVDPPEEKP-----QAEESIFQQD 83
            |.|::.......:..:|....:|..:.|...|...|.....|..|.:|:.     |..|:||   
  Rat    45 PEDLDENMDYRLMWEVRGSKGEVLYILDATNPRHSNWLRFVHEAPSQERKNLAAIQEGENIF--- 106

  Fly    84 ESADGACVQLHIDAVRSSTN----------ETEESDVSLVTDEEESVQDEDPSEPALDDANLKTT 138
                    .|.:|.:.:.|.          |.||.:...:|...|...|....:.|...      
  Rat   107 --------YLAVDDIETDTELLIGYLDSDVEAEEEEQQALTMAREGKVDHSKGQLAAGS------ 157

  Fly   139 PTYKFH------------PSFFRRDHRTIKFIEIYKEHPCLWNPAHSDYKEPK-----KCKEALK 186
               |.|            .|.|..:       |:..||      ..|.:::|.     ||:...|
  Rat   158 ---KGHLGCEEDFACPQCESSFPSE-------EVLTEH------LQSLHQKPTGEKEFKCENCGK 206

  Fly   187 RMAIDLEATVSVFLNEMALKLAIKKVHMQFNTVHKRVVSGKQKPQSLAFSIYKLCCFLNA----- 246
            :..:               :.|:::...|    |::...|..          :..|.:::     
  Rat   207 KFPV---------------RQALQRHFEQ----HQKACRGDA----------RFVCKVDSCGKRL 242

  Fly   247 -SND------EEGATNNEKIKLDFSKKNKLTTDL--IEMYANFPQLYDSNH--KEFSNMS----- 295
             |.|      |...|.:.|.||..|..|:..|.|  ::.:....:::|...  |:|.:.:     
  Rat   243 KSKDALKRHRENVHTGDPKRKLICSVCNRRCTSLSSLQEHRKIHEIFDCQECMKKFISANQLKRH 307

  Fly   296 ----SRKQAYESMAAEISVPNVD-------INSDDIFRAIQNLRQWYYKNTKHAIYAGSTAEKFY 349
                |.|:.|.......|...:|       |:|:|                          :.:.
  Rat   308 MITHSEKRPYNCEICNKSFKRLDQVGAHKVIHSED--------------------------KPYQ 346

  Fly   350 LEVC--RFMPAKMYKQR---------LVCEFCHQITSSDHVLQSHIFKAHNIGELPFKCTLCDRS 403
            .::|  .|....:||..         ..|:.|..:..:...||.|:. .|| .|..|||..||.:
  Rat   347 CKLCGKGFAHRNVYKNHKKTHSEERPFQCDECKALFRTPFSLQRHLL-IHN-SERTFKCHHCDAT 409

  Fly   404 FVGRCELANHIQRVH-IGKTHKCTHCERSFAVMSDLQLHIRTHTGHKPYVCEHCGKAFRLRSQMT 467
            |..:..|..|:|.|| ..|.::|..|.::|...|.|:.|.:||||.|..||.:||:.|.....:.
  Rat   410 FKRKDTLNVHVQVVHERHKKYRCELCSKAFVTPSVLRSHKKTHTGEKEKVCPYCGQKFASSGTLR 474

  Fly   468 LHVTAIHTKIRAFKCTMCPKDFVKKVDLSDHIKGHLNIRDKICSVCGKGFTSCHALIRHRQIHSE 532
            :|:.: ||..|.::|..|.|.|.|...|..||:.|...:...||.|.|.|:....|..|::.|:.
  Rat   475 VHIRS-HTGERPYQCPYCEKGFSKNDGLKMHIRTHTREKPYQCSECSKAFSQKRGLDEHKRTHTG 538

  Fly   533 VKKFVCKLCDSRFSQFVGLNTHMKRTHN 560
            .|.|.|.:||..||....|..| |.|||
  Rat   539 EKPFQCDVCDLAFSLKKMLIRH-KMTHN 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1602NP_610291.2 GT1 157..244 CDD:304916 13/91 (14%)
MADF_DNA_bdg 273..356 CDD:287510 13/104 (13%)
C2H2 Zn finger 367..388 CDD:275368 5/20 (25%)
C2H2 Zn finger 397..418 CDD:275368 7/20 (35%)
COG5048 <423..554 CDD:227381 45/130 (35%)
C2H2 Zn finger 425..445 CDD:275368 6/19 (32%)
zf-H2C2_2 437..460 CDD:290200 11/22 (50%)
C2H2 Zn finger 453..470 CDD:275368 4/16 (25%)
C2H2 Zn finger 482..502 CDD:275368 8/19 (42%)
C2H2 Zn finger 510..530 CDD:275368 7/19 (37%)
C2H2 Zn finger 538..559 CDD:275368 8/20 (40%)
Prdm5XP_038964622.1 PR-SET_PRDM5 2..128 CDD:380967 17/93 (18%)
C2H2 Zn finger 169..190 CDD:275368 6/33 (18%)
COG5048 186..590 CDD:227381 106/439 (24%)
C2H2 Zn finger 201..221 CDD:275368 4/38 (11%)
C2H2 Zn finger 233..256 CDD:275368 4/22 (18%)
C2H2 Zn finger 266..286 CDD:275368 4/19 (21%)
C2H2 Zn finger 291..311 CDD:275368 2/19 (11%)
C2H2 Zn finger 319..339 CDD:275368 2/19 (11%)
C2H2 Zn finger 347..367 CDD:275368 4/19 (21%)
C2H2 Zn finger 375..395 CDD:275368 5/20 (25%)
C2H2 Zn finger 403..420 CDD:275368 5/16 (31%)
C2H2 Zn finger 432..452 CDD:275368 6/19 (32%)
C2H2 Zn finger 460..480 CDD:275368 5/20 (25%)
C2H2 Zn finger 488..508 CDD:275368 8/19 (42%)
C2H2 Zn finger 516..536 CDD:275368 7/19 (37%)
C2H2 Zn finger 544..564 CDD:275368 8/20 (40%)
C2H2 Zn finger 573..594 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24393
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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