DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1602 and indra

DIOPT Version :10

Sequence 1:NP_610291.2 Gene:CG1602 / 35684 FlyBaseID:FBgn0033186 Length:577 Species:Drosophila melanogaster
Sequence 2:NP_728599.1 Gene:indra / 38159 FlyBaseID:FBgn0035213 Length:733 Species:Drosophila melanogaster


Alignment Length:815 Identity:121/815 - (14%)
Similarity:225/815 - (27%) Gaps:376/815 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LICVSRDYEKFLMRCSYCPTDV---------------EVAQWQEFVLHIRNVHS----------- 44
            |:|.:....:..:||.:|.|..               ::....|.:.| |::.|           
  Fly     5 LLCENMTKVQKEVRCDHCGTSQGSKSVFSGQKVFLGRKITDVLETITH-RSIPSSLPIKICFVCT 68

  Fly    45 -----------KVRSMEDDFEPVGENSTESGHVDPPEEK---------PQAEESIFQQDES---- 85
                       |||...|..:......|:...::.|..:         |:...::.|:.:|    
  Fly    69 STFMSSAALIEKVRETVDRVQEQPAKKTKVAEIEEPSTQESDKKAVKVPKKNTTLRQRSKSIAAF 133

  Fly    86 ----ADGACVQLHIDAVRSSTNETEE--------------------------------------- 107
                .:||.....|:.:.:|..:.::                                       
  Fly   134 PPSFVNGANTNTEIEIISASPKKLDKTPKKQISRLFEDNLNDSVKLTPAKEVSSTKKAFLNLFGN 198

  Fly   108 --SDVSLVTDEEESVQDEDPSEPALDDANLKTTPTYKFHPSFFRRDHRTIKFIEIYKEH------ 164
              :|...|..|.|..:|.|.....::..|.: .|..:||          .||.:.||||      
  Fly   199 GGNDAIEVLTESEEEEDSDKGPITINTNNFQ-CPECEFH----------AKFPKPYKEHLQKEHG 252

  Fly   165 -------PC------------LWN---PAHS---DYKEPKKCKEALKRMA-------IDLEATVS 197
                   ||            |.|   ..||   :.:...|.||:.::.|       ||.:|.  
  Fly   253 LQRPRIYPCTLCIKTFGVLKTLKNHLRDTHSRTFESEAKTKAKESKEKEAKSGAKNKIDAKAK-- 315

  Fly   198 VFLNEMALKLAIKKVHMQFNTVHKRVVSGKQKPQSLAFSIYKLCCFLNASNDEEGATNNEKIKLD 262
                                  ....||.::||                   :|..:..:|.::.
  Fly   316 ----------------------ETNAVSQRKKP-------------------KEKKSKEKKTEIK 339

  Fly   263 FSKKNKLTTDLIEMYAN--FPQLYDSNHKEFSNMSSRKQAYESMAAEISVPNVDINSDDIFRAIQ 325
            .:.:.|:..::.:...|  .....|::..:.:.::|.|...||:..:..:.|| |:|:..| || 
  Fly   340 CNVETKVVDEIDDQVNNKKGTDSEDADQTQATKIASFKALNESLMKKRMLENV-IDSEYTF-AI- 401

  Fly   326 NLRQWYYKNTKHAIYAGSTAEKFYLEVCRFMPAKMYKQRLVCEFCHQITSSDHVLQSHIFKAHNI 390
                    |...|....:.:..|..|:|.               |..:|:..  :|.|:...|:|
  Fly   402 --------NGSSASTPRADSNNFQCEICD---------------CELMTAKQ--MQEHMKTVHSI 441

  Fly   391 GELP--FKCTLCDRS-------------------------------------FVGRCELANHIQR 416
             :.|  |||.:|::|                                     .:|..::.|..::
  Fly   442 -DKPKVFKCHVCEKSLATKQSLKTHMTLHADGAEAPNSSKRKILQDEDEDVDILGTTQIENTAEK 505

  Fly   417 VH--------------------------------------------------------------- 418
            |.                                                               
  Fly   506 VEGPKKSQQSPTKAAKFTNRKILQEEDEVVEIVDAFKTDNTAEDDEGPAEEKIIRSRNNIQHQVD 570

  Fly   419 ---------IGKTHKCTHCERSFA-----------------------------VMSDLQLHIRTH 445
                     ..||.|.:|.:.|.:                             ::.::..::|.|
  Fly   571 GGMIAPRSPAKKTKKTSHVDLSVSTTNGNSPAKSEKRKKQDKSEDTLPSSDVDIVEEINYNVRPH 635

  Fly   446 ------------TGHKPYVCEHCGKAFRLRSQMTLHVTAIHTKIRAFKCTMCPKDFVKKVDLSDH 498
                        .......|:.|||..:.|.::..|:...|.  ...:||:|.:.:..::|...|
  Fly   636 KKARLESIGDSTADESTLSCDRCGKFVKSRQRLDSHMEKKHA--AKLQCTLCKEVYQNQMDYVAH 698

  Fly   499 IKGHLNIRDKICSV--CGKGFTSCHALIRH-RQIH 530
            .....:.....|.|  |.|.||..:.|..| |:.|
  Fly   699 FSNCGSEGGLPCGVANCKKVFTEANFLSSHLRKRH 733

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1602NP_610291.2 MADF_DNA_bdg 157..244 CDD:463144 22/124 (18%)
MADF_DNA_bdg 273..356 CDD:463144 18/84 (21%)
C2H2 Zn finger 367..388 CDD:275368 4/20 (20%)
C2H2 Zn finger 397..418 CDD:275368 5/57 (9%)
C2H2 Zn finger 425..445 CDD:275368 3/48 (6%)
zf-H2C2_2 437..460 CDD:463886 6/34 (18%)
C2H2 Zn finger 453..470 CDD:275368 5/16 (31%)
C2H2 Zn finger 482..502 CDD:275368 5/19 (26%)
C2H2 Zn finger 510..530 CDD:275368 9/22 (41%)
C2H2 Zn finger 538..559 CDD:275368
indraNP_728599.1 SUF4-like 418..499 CDD:411020 15/98 (15%)
C2H2 Zn finger 418..439 CDD:411020 6/37 (16%)
C2H2 Zn finger 418..439 CDD:275370 6/37 (16%)
C2H2 Zn finger 449..469 CDD:411020 3/19 (16%)
C2H2 Zn finger 449..469 CDD:275370 3/19 (16%)
Blue background indicates that the domain is not in the aligned region.

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