DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1602 and Znf48

DIOPT Version :10

Sequence 1:NP_610291.2 Gene:CG1602 / 35684 FlyBaseID:FBgn0033186 Length:577 Species:Drosophila melanogaster
Sequence 2:NP_001388702.1 Gene:Znf48 / 103690203 RGDID:9115869 Length:590 Species:Rattus norvegicus


Alignment Length:247 Identity:72/247 - (29%)
Similarity:98/247 - (39%) Gaps:57/247 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 VCEFCHQITSSDHVLQSHIFKAHNIGELPFKCTLCDRSFVGRCELANHIQRVHIG-KTHK----- 424
            ||..|.:.......|..|  :..:.||.|:||.:|.:.|........| ||.|.| |.::     
  Rat    84 VCGECGKSFRQMSDLVKH--QRTHTGEKPYKCGVCGKGFGDSSARIKH-QRTHTGEKPYRVRPPA 145

  Fly   425 -------------------CTHCERSFAVMSDLQLHIRTHTGHKPYVCEHCGKAF-----RLRSQ 465
                               |..|.:||...|||..|.|||||.|||.|..|||.|     |::.|
  Rat   146 PGPPKMPRSRIPAGERPTICGECGKSFRQSSDLVKHQRTHTGEKPYKCGICGKGFGDSSARIKHQ 210

  Fly   466 MTLH-------------------VTAIH---TKIRAFKCTMCPKDFVKKVDLSDHIKGHLNIRDK 508
            .| |                   ..|.|   .:.:.:.||.|.|.||....|..|.:.||..:..
  Rat   211 RT-HRGDQLPRPVVPRRQPSQAAPEATHRPKAQDKPYICTDCGKRFVLSCSLLSHQRSHLGPKPF 274

  Fly   509 ICSVCGKGFTSCHALIRHRQIHSEVKKFVCKLCDSRFSQFVGLNTHMKRTHN 560
            .|.||||.|.....|::|.::|:..|.::|..|...|:.......|: |||:
  Rat   275 GCDVCGKEFARGSDLVKHLRVHTGEKPYLCPECGKGFADSSARVKHL-RTHS 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1602NP_610291.2 MADF_DNA_bdg 157..244 CDD:463144
MADF_DNA_bdg 273..356 CDD:463144
C2H2 Zn finger 367..388 CDD:275368 4/20 (20%)
C2H2 Zn finger 397..418 CDD:275368 6/20 (30%)
C2H2 Zn finger 425..445 CDD:275368 9/19 (47%)
zf-H2C2_2 437..460 CDD:463886 15/22 (68%)
C2H2 Zn finger 453..470 CDD:275368 9/40 (23%)
C2H2 Zn finger 482..502 CDD:275368 8/19 (42%)
C2H2 Zn finger 510..530 CDD:275368 8/19 (42%)
C2H2 Zn finger 538..559 CDD:275368 5/20 (25%)
Znf48NP_001388702.1 zf-C2H2 84..105 CDD:395048 5/22 (23%)
C2H2 Zn finger 85..105 CDD:275368 4/21 (19%)
zf-H2C2_2 97..120 CDD:463886 8/24 (33%)
C2H2 Zn finger 113..133 CDD:275368 6/20 (30%)
COG5048 161..571 CDD:227381 54/167 (32%)
C2H2 Zn finger 165..185 CDD:275368 9/19 (47%)
C2H2 Zn finger 193..213 CDD:275368 8/20 (40%)
C2H2 Zn finger 248..268 CDD:275368 8/19 (42%)
C2H2 Zn finger 276..296 CDD:275368 8/19 (42%)
C2H2 Zn finger 304..324 CDD:275368 5/20 (25%)
C2H2 Zn finger 332..352 CDD:275368
C2H2 Zn finger 425..445 CDD:275368
C2H2 Zn finger 453..537 CDD:275368
C2H2 Zn finger 545..565 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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