DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1603 and rgr

DIOPT Version :10

Sequence 1:NP_610290.2 Gene:CG1603 / 35683 FlyBaseID:FBgn0033185 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001163089.2 Gene:rgr / 35843 FlyBaseID:FBgn0267792 Length:889 Species:Drosophila melanogaster


Alignment Length:487 Identity:118/487 - (24%)
Similarity:195/487 - (40%) Gaps:98/487 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 AGKEVTQMDESSQNHIPLNTDDDDVDCSDFFMSEDDLAPPRKPGRPPRRTRPGQVFKFKVSFIRS 195
            |.:|....:||:::.....||.|....|..:                     .:|..|       
  Fly   429 AEREAKISNESTESEKSCETDADSCGKSSLY---------------------HEVLSF------- 465

  Fly   196 NPRVLHLIQAYKEHPCLWNPSDEHYQ-DEPARSMAYEAIMERMDRKANVLFTVEELKKTLEQLHV 259
                  ::.|:|...|||||  :||. ....::..:..|..::..:.|...:.||....:::|..
  Fly   466 ------ILDAFKRQECLWNP--QHYDYTTCCKTELFRDISVQLQEELNYELSGEECCNEIQKLRT 522

  Fly   260 QY--TLALETKQRGKLVGLAARYFAK--C----EFLSVAPVVTPR-------------ENEEDN- 302
            :|  .|.:..|.:|       .|..|  |    |||.  |::..:             .|::.. 
  Fly   523 RYRKELRMVIKHKG-------LYLPKLWCYDEMEFLQ--PILQEQIFNKISKKIGVVGSNQKTKF 578

  Fly   303 -DLTAIKLNFKEENLITTSFIETYANYPVLYNQALPDFGSIEIRADAFKRMAKEFQPVVKANETD 366
             |.::|:.:..|:.|   .|:|.|.||..|::...|||.|...|:.|..:|..|.......:.| 
  Fly   579 IDASSIRFDNTEKQL---QFVEIYHNYSALWDVDHPDFRSNTYRSQALGQMLDEINTTFHTSYT- 639

  Fly   367 VYIAVNKLRRWLYDAIRRL---KSKELIQKCSKQEVQYL--QMCSFL-----PAKGSESQVLYCD 421
                ..:|.:.|::..:..   |.|.|.:......:..|  ::..||     |.:        ||
  Fly   640 ----AEQLEKTLFNLRKEFSAQKRKILTESEDSSSIPLLHAKLAEFLDQNLGPFR--------CD 692

  Fly   422 YCDKRFHGDYNLRVHIVKAHEVGDLPYLCSFCPRRFDRHVDMDRHKLRSHFERKLKCQYCEKSFA 486
            .|..........:|| ..||: |..|::|:.|.:.|....::..|..|...:....|:.|:|.||
  Fly   693 ICSDLVKTCDQYKVH-RSAHD-GTQPFICTLCGKGFQMPCNLTVHIRRHRRDFPYSCEQCDKRFA 755

  Fly   487 VDTDLKVHTLIHTGERPHVCDICGKTFRLKLLLDHHVNGVHLNIRPYSCNMCTKTFRKKFELANH 551
            ..|::.:|...||||||::||:|||:|:.....|.| ...|||...:.|.:|.|.|.:|....:|
  Fly   756 TSTEVAIHLRTHTGERPYICDLCGKSFKTWSFFDIH-RRRHLNQSTFHCPICAKGFYEKNRFTDH 819

  Fly   552 IKGHLNIRDKKCEYCDATFYDHSSLSRHRRSH 583
            :..|..||...|..|..||..:.:|.:|...|
  Fly   820 MNSHWAIRKHLCTVCGKTFTTYGNLKKHTELH 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1603NP_610290.2 MADF_DNA_bdg 202..287 CDD:463144 22/93 (24%)
MADF_DNA_bdg 321..408 CDD:463144 21/91 (23%)
C2H2 Zn finger 420..441 CDD:275368 5/20 (25%)
COG5048 <424..583 CDD:227381 50/158 (32%)
C2H2 Zn finger 450..471 CDD:275368 5/20 (25%)
C2H2 Zn finger 478..498 CDD:275368 7/19 (37%)
C2H2 Zn finger 506..527 CDD:275368 8/20 (40%)
C2H2 Zn finger 535..555 CDD:275368 6/19 (32%)
C2H2 Zn finger 563..583 CDD:275368 6/19 (32%)
rgrNP_001163089.2 MADF 334..425 CDD:214738
MADF 466..556 CDD:214738 25/100 (25%)
MADF_DNA_bdg 595..682 CDD:463144 21/91 (23%)
C2H2 Zn finger 691..711 CDD:275368 5/20 (25%)
C2H2 Zn finger 719..739 CDD:275368 4/19 (21%)
COG5048 742..>824 CDD:227381 30/82 (37%)
C2H2 Zn finger 747..767 CDD:275368 7/19 (37%)
C2H2 Zn finger 775..795 CDD:275368 8/20 (40%)
C2H2 Zn finger 803..818 CDD:275368 5/14 (36%)
C2H2 Zn finger 831..851 CDD:275368 6/19 (32%)
C2H2 Zn finger 859..877 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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