DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mEFTu2 and eefsec

DIOPT Version :9

Sequence 1:NP_610288.1 Gene:mEFTu2 / 35681 FlyBaseID:FBgn0033184 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_001032513.1 Gene:eefsec / 641497 ZFINID:ZDB-GENE-051120-72 Length:576 Species:Danio rerio


Alignment Length:464 Identity:126/464 - (27%)
Similarity:195/464 - (42%) Gaps:91/464 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 NVGTIGHVDHGKTTLTAAITRIQSQKGLAEYLSYDQIDRAPEEKARGITINAC----------HI 113
            |||.:||||.|||:|..|::...|...         .|:.|:.|.||||::..          |:
Zfish    11 NVGVLGHVDSGKTSLARALSSTASTAA---------FDKNPQSKERGITLDLGFSAFTVPLPEHL 66

  Fly   114 GYSTTERTY-----AHTDCPGHADYIKNMISGASQMDGAILVVAATDGQMPQTREHLLLAKQVGI 173
            ..|..|:.|     ...||||||..|:.:|.||..:|..:|||....|...||.|.||:. |:..
Zfish    67 RESCGEKQYDSLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGMQTQTAECLLIG-QLTC 130

  Fly   174 QRIIVFINKADLVD----QEVLELVEIEMREMLSDFGFDGVNSPVICGSALLALRE--DKSE-FG 231
            .|::|.:||.||:.    |..::.:...|.:.|.:..|.  :.|:|..:|.....|  |..| .|
Zfish   131 SRMVVILNKTDLLPSDKRQAAIDKMTKRMHKTLENTRFK--DCPIIAVAAKPGGPEAPDTDEPQG 193

  Fly   232 VPSIEKLLEQCDSYIPTPQRDISSPFILPIDNAFTVPGRGTVVVGTIKRGTIPRNADADLLGFNQ 296
            :..:..|| :..|::  |.||.|...::.:|:.|::.|:|||:.|||.:|::..|.:.::.....
Zfish   194 ITELIDLL-KAQSFL--PHRDPSGSLLMAVDHCFSIRGQGTVITGTILQGSLSVNDNVEIPALKV 255

  Fly   297 NLKTSISDIQIFRKSVPQAQAGENVGALLRGIKISAVERGMLLCATGSED------IS----NHF 351
            ..|  :..:|:|||.|..|..|:.||..:.......:||| ::|..||..      ||    .::
Zfish   256 TRK--VKSVQMFRKPVASAMQGDRVGVCVTQFDPKLLERG-VVCTPGSLQTLYAAIISVQKIEYY 317

  Fly   352 EGSMYLLSRA-------------------------EGGRVKPMLSKYIQQLFSQTWNVPARIDIV 391
            .|:  |.|||                         |.|..||...:.....||..|......:.:
Zfish   318 RGA--LNSRAKFHITVGHETVMARISFFNRVLPANENGDSKPTSQEQSANSFSFDWEFHHLDEHL 380

  Fly   392 PSEAMLMPGEHGQVRVTLLRKMVMTPGQAFTIRE------NGAT--------VATGMVTQRLPSL 442
            .|:|....||..|..:....:.|..|.....|..      :|.|        :..|...:.....
Zfish   381 TSQAEGGKGEPQQWALLEFERPVTCPPLCLVIGSRLDSDIHGNTCRLAFHGKLLEGFEDKNYTET 445

  Fly   443 DLPKNKLSK 451
            .||:.|:||
Zfish   446 ALPRLKISK 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mEFTu2NP_610288.1 PRK00049 53..437 CDD:234596 121/448 (27%)
EF_Tu 56..249 CDD:206671 65/211 (31%)
EFTU_II 257..343 CDD:293898 25/85 (29%)
mtEFTU_III 347..437 CDD:294005 25/132 (19%)
eefsecNP_001032513.1 SelB_euk 10..202 CDD:206676 64/203 (32%)
GTP_EFTU 11..201 CDD:278438 62/201 (31%)
SelB_II 216..298 CDD:293897 25/84 (30%)
eSelB_III 303..433 CDD:294009 24/131 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
21.870

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