DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mEFTu2 and si:dkey-37o8.1

DIOPT Version :9

Sequence 1:NP_610288.1 Gene:mEFTu2 / 35681 FlyBaseID:FBgn0033184 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_001157466.1 Gene:si:dkey-37o8.1 / 407641 ZFINID:ZDB-GENE-030131-5667 Length:458 Species:Danio rerio


Alignment Length:466 Identity:118/466 - (25%)
Similarity:211/466 - (45%) Gaps:82/466 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 RELPHCNVGTIGHVDHGKTTLTAAIT---------------RIQSQKGLAEYLSYDQIDRAPEEK 102
            :|..|.|:..|||||.||:|.|..:.               :..:|.|.:.:.....:|:...|:
Zfish     3 KERIHINLVIIGHVDGGKSTTTGHLVYKCGGIDHRTIEKYEKAATQMGKSSFKYAWVLDKLKAER 67

  Fly   103 ARGITINACHIGYSTTERTYAHTDCPGHADYIKNMISGASQMDGAILVVAATDGQMP-------Q 160
            .|||||:...:.::|.:.|:...|.|||.|:|||||:|.||.|.|:|:|:|..|:..       |
Zfish    68 ERGITIDISLLKFNTQKYTFTIIDAPGHRDFIKNMITGTSQADAALLIVSAAKGEFEAGISRNGQ 132

  Fly   161 TREHLLLAKQVGIQRIIVFINKADLVD--------QEVLELVEIEMREMLSDFGFDGVNSPVI-- 215
            ||||.|||..:|:::::|.:||.||.:        .||:..|.:.::::    ||:....|.|  
Zfish   133 TREHALLAYTLGVKQLVVCVNKMDLTEPPFSQKRYDEVVRNVSVFVKKI----GFEIGAVPFIPI 193

  Fly   216 ---CGSALLALREDKSEFGVPSIEK---------LLEQCDSYIPTPQRDISSPFILPIDNAFTVP 268
               .|..::...:....|....:::         |||..||..| |.|:...|..||:.:.:.:.
Zfish   194 SGWSGENMIVPSQKMQWFKGWKLKRKEGHCHGRTLLEVLDSLHP-PVRNAGKPLRLPLQDVYKIG 257

  Fly   269 GRGTVVVGTIKRGTIPRNADADLLGFN-QNLKTSISDIQIFRKSVPQAQAGENVGALLRGIKISA 332
            |.|||.||.|:.|.:....   :|.|: ..|...:..|::..:.:..|..|.|||..::.:.:..
Zfish   258 GVGTVPVGKIETGVLKPGM---VLTFSPAKLTAEVKSIEMHHQGLQTALPGHNVGFNIKNVSVKN 319

  Fly   333 VERGMLLCATGS------EDISNHFEGSMYLLSRAEGGRVK----PMLSKYIQQLFSQTWNVPAR 387
            :.||.:   .|:      .|:|: |...:.:|:..  |::|    |:|..:...:..:...:..:
Zfish   320 LRRGDV---AGNAQQDPPSDVSS-FIAQIIMLNHP--GKIKVGYSPVLDCHTTHVSCRFAELREK 378

  Fly   388 IDIVPSEAM------LMPGEHGQVRVTLLRKMVM------TPGQAFTIRENGATVATGMVTQRLP 440
            :|......:      |..|:...|::...:.:.:      .|...|.:|:...|||.|:: :.:.
Zfish   379 LDRRSGRKLESWPQYLRSGDGATVKLVPNKPLCVESFFHYPPLGRFAVRDLKQTVAVGVI-KSVE 442

  Fly   441 SLDLPKNKLSK 451
            .:|..|....|
Zfish   443 KVDQAKKTSQK 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mEFTu2NP_610288.1 PRK00049 53..437 CDD:234596 115/450 (26%)
EF_Tu 56..249 CDD:206671 70/236 (30%)
EFTU_II 257..343 CDD:293898 21/86 (24%)
mtEFTU_III 347..437 CDD:294005 18/105 (17%)
si:dkey-37o8.1NP_001157466.1 PTZ00141 1..458 CDD:185474 118/466 (25%)
EF1_alpha 9..239 CDD:206670 69/234 (29%)
EF1_alpha_II 244..332 CDD:293894 23/93 (25%)
EF1_alpha_III 337..438 CDD:294004 18/103 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592502
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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