DRSC/TRiP Functional Genomics Resources

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Protein Alignment mEFTu2 and Gspt1

DIOPT Version :9

Sequence 1:NP_610288.1 Gene:mEFTu2 / 35681 FlyBaseID:FBgn0033184 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_666178.2 Gene:Gspt1 / 14852 MGIID:1316728 Length:636 Species:Mus musculus


Alignment Length:542 Identity:141/542 - (26%)
Similarity:215/542 - (39%) Gaps:170/542 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 WRQCEAGLVRRISQALIGPGAS---QSRWTGTRLLATSADKNP-------APGLRELPHCNVGTI 63
            |...|     .||:|..|.|:|   :.....|:.:....::.|       .||..:..|.||..|
Mouse   158 WEHKE-----EISEAEPGGGSSGDGRPPEESTQEMMEEEEEIPKPKSAVAPPGAPKKEHVNVVFI 217

  Fly    64 GHVDHGKTT-------LTAAITRIQSQKGLAE---------YLSYDQIDRAPEEKARGITINACH 112
            ||||.||:|       ||..:.:...:|...|         |||: .:|...||:.:|.|:....
Mouse   218 GHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSW-ALDTNQEERDKGKTVEVGR 281

  Fly   113 IGYSTTERTYAHTDCPGHADYIKNMISGASQMDGAILVVAATDGQMP-------QTREHLLLAKQ 170
            ..:.|.::.:...|.|||..::.|||.||||.|.|:||::|..|:..       |||||.:|||.
Mouse   282 AYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT 346

  Fly   171 VGIQRIIVFINKADLVDQEV---LELVEIEMREMLSDF----GFDGVNSP------VICGSALLA 222
            .|::.:||.|||.|  |..|   .|..| |.:|.|..|    ||    :|      :.|.....|
Mouse   347 AGVKHLIVLINKMD--DPTVNWSNERYE-ECKEKLVPFLKKVGF----NPKKDIHFMPCSGLTGA 404

  Fly   223 LREDKSEF-----GVPSIEKLLEQCDSYIPTPQRDISSPFILPIDNAFTVPGRGTVVVGTIKRGT 282
            ..:::|:|     |:|.|..|     ..:|...|.:..|..|||.:.:  ...||||:|.::.|:
Mouse   405 NLKEQSDFCPWYIGLPFIPYL-----DNLPNFNRSVDGPIRLPIVDKY--KDMGTVVLGKLESGS 462

  Fly   283 I---------PRNADADLLGFNQNLKTSISDIQIFRKSVPQAQAGENVGALLRGIKISAVERGML 338
            |         |...:.::||.       :|| .:...||   ..|||:...|:||:...:..|.:
Mouse   463 ICKGQQLVMMPNKHNVEVLGI-------LSD-DVETDSV---APGENLKIRLKGIEEEEILPGFI 516

  Fly   339 LCATGSEDISNHFEGSMYLLSRAEGGRVKPMLSKYIQQLFSQTWNVPARIDIVPSEAMLMPGEHG 403
            ||     |::|          ....||                 ...|:|.|:..::::.||.:.
Mouse   517 LC-----DLNN----------LCHSGR-----------------TFDAQIVIIEHKSIICPGYNA 549

  Fly   404 ---------QVRVTLLRKMV-------------------------MTPGQ-------------AF 421
                     :|.:|.|..:|                         .|.|.             .|
Mouse   550 VLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRF 614

  Fly   422 TIRENGATVATGMVTQRLPSLD 443
            |:|:.|.|:|.|.|.:.:|..|
Mouse   615 TLRDEGKTIAIGKVLKLVPEKD 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mEFTu2NP_610288.1 PRK00049 53..437 CDD:234596 127/480 (26%)
EF_Tu 56..249 CDD:206671 76/233 (33%)
EFTU_II 257..343 CDD:293898 26/94 (28%)
mtEFTU_III 347..437 CDD:294005 22/136 (16%)
Gspt1NP_666178.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..54
PAM2 64..81 CDD:284542
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 90..206 11/52 (21%)
TEF1 209..633 CDD:227581 127/481 (26%)
EF1_alpha 213..429 CDD:206670 74/228 (32%)
G1. /evidence=ECO:0000255|PROSITE-ProRule:PRU01059 218..225 5/6 (83%)
G2. /evidence=ECO:0000255|PROSITE-ProRule:PRU01059 274..278 2/3 (67%)
G3. /evidence=ECO:0000255|PROSITE-ProRule:PRU01059 295..298 1/2 (50%)
G4. /evidence=ECO:0000255|PROSITE-ProRule:PRU01059 357..360 2/2 (100%)
G5. /evidence=ECO:0000255|PROSITE-ProRule:PRU01059 399..401 0/1 (0%)
eRF3_II 438..519 CDD:293906 27/98 (28%)
eRF3_C_III 525..631 CDD:294003 21/122 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847262
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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