DRSC/TRiP Functional Genomics Resources

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Protein Alignment mEFTu2 and HBS1

DIOPT Version :9

Sequence 1:NP_610288.1 Gene:mEFTu2 / 35681 FlyBaseID:FBgn0033184 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_001286906.1 Gene:HBS1 / 117365 FlyBaseID:FBgn0042712 Length:670 Species:Drosophila melanogaster


Alignment Length:434 Identity:111/434 - (25%)
Similarity:188/434 - (43%) Gaps:65/434 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 HCNVGTIGHVDHGKTTLTAAI--------TRI------QSQK-GLAEYLSYDQIDRAPEEKARGI 106
            |.::..|||||.||:||...:        .|:      :|:| |...::....:|...||:||||
  Fly   247 HIHMIVIGHVDAGKSTLMGHLLYDTGNVSQRVMHKHEQESKKLGKQSFMYAWVLDETGEERARGI 311

  Fly   107 TINACHIGYSTTERTYAHTDCPGHADYIKNMISGASQMDGAILVVAATDGQMP-------QTREH 164
            |::.......|..:.....|.|||.|:|.||||||:|.|.|:|||.||.|:..       |||||
  Fly   312 TMDVGQSRIETKTKIVTLLDAPGHKDFIPNMISGATQADVALLVVDATRGEFESGFELGGQTREH 376

  Fly   165 LLLAKQVGIQRIIVFINKADLV--DQEVLELVEIEMREMLSDFGF---DGVNSPV--ICGSALLA 222
            .:|.:.:|:.::.|.|||.|.|  .|:....:..:::..|...||   |...:|.  :.|..|..
  Fly   377 AILVRSLGVNQLGVVINKLDTVGWSQDRFTEIVTKLKSFLKLAGFKDSDVSFTPCSGLTGENLTK 441

  Fly   223 LREDKSEFGVPSIEKLLEQCDSYIPTPQRDISSPFILPIDNAFTVPGRGTVVVGTIKRGTIPRNA 287
            ..::.:.....|...||:..::: ..|:|.|..|..:.:.:.:...|.|..:.|.::.|.:..| 
  Fly   442 KAQEPALTNWYSGRHLLDVIENF-KIPERAIDRPLRMSVSDIYKGTGSGFCISGRVETGVLCLN- 504

  Fly   288 DADLLGFNQNLKTSISDIQIFRKSVPQ--AQAGENVGALLRGIKISAVERGMLLCATGSE-DISN 349
            |..|:|.::. :..:..:.:  ...||  ..||:.|...|..:.|:.|..|.::....:. .::.
  Fly   505 DKVLVGASRE-QAQVKSLTM--NEFPQTCVFAGDQVSVTLPALDINNVTVGCIISDPQTPIPVTT 566

  Fly   350 HFEGSMYLLSRAEGGRVK-PMLSKYIQQLFSQTWNVPARIDIVPSEAMLMPGE--------HGQV 405
            .|:..:.:.:      || |:...:...|..|:...||.:..:.:......||        .|..
  Fly   567 RFQARIIVFN------VKVPITMGFPVLLHHQSLIEPAVVCKLTASIHKSTGEVVKKKPRCLGNN 625

  Fly   406 RVTLLRKMVMTP------------GQAFTIRENGATVATGMVTQ 437
            ...|:......|            |:.. :|..|.|:|.||||:
  Fly   626 SCALVELETSRPICIERYADFKELGRVM-LRVAGVTIAAGMVTK 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mEFTu2NP_610288.1 PRK00049 53..437 CDD:234596 110/432 (25%)
EF_Tu 56..249 CDD:206671 68/220 (31%)
EFTU_II 257..343 CDD:293898 17/87 (20%)
mtEFTU_III 347..437 CDD:294005 21/110 (19%)
HBS1NP_001286906.1 HBS1_N 83..145 CDD:286079
TEF1 241..669 CDD:227581 111/434 (26%)
EF1_alpha 249..468 CDD:206670 67/219 (31%)
HBS1-like_II 474..557 CDD:293912 18/86 (21%)
HBS1_C_III 561..669 CDD:294008 22/115 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464594
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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