DRSC/TRiP Functional Genomics Resources

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Protein Alignment didum and VIIIB

DIOPT Version :9

Sequence 1:NP_724569.1 Gene:didum / 35680 FlyBaseID:FBgn0261397 Length:1800 Species:Drosophila melanogaster
Sequence 2:NP_001328307.1 Gene:VIIIB / 828845 AraportID:AT4G27370 Length:1136 Species:Arabidopsis thaliana


Alignment Length:1180 Identity:368/1180 - (31%)
Similarity:563/1180 - (47%) Gaps:228/1180 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 NPAILVGQNDLTTLSYLHEPGVLHNLRVRFCERQIIYTYCGIILVAINPYAEMPLYGPSIIRAYR 129
            ||.||.|..|||.||||:||.:|:|||||: .:.:||:..|.:|:|:||:..:.:||...:.||:
plant   161 NPEILEGVEDLTQLSYLNEPSLLYNLRVRY-SQDLIYSKAGPVLIAVNPFKNVQIYGEEFLSAYQ 224

  Fly   130 GHAMGDLEPHIFALAEEAYTKLERENCNLSIIVSGESGAGKTVSAKYAMRYFAAVGGSESETQVE 194
            .:|:.  .||::|:|:.||..:.||..|.|||:|||||||||.:|||||:|..|:||  ....||
plant   225 KNALD--APHVYAVADAAYDDMMREEKNQSIIISGESGAGKTETAKYAMQYLEALGG--GSFGVE 285

  Fly   195 RKVLASSPIMEAFGNAKTTRNDNSSRFGKFTKLLFRNQMGVMFLQGATMHTYLLEKSRVVYQAQG 259
            .::|.::.|:||||||||:||||||||||..::.|..:..:.   ||.:.|:.|::|||.....|
plant   286 NEILKTNCILEAFGNAKTSRNDNSSRFGKLMEIHFSAKGKIC---GAKLETFSLDQSRVAQLCNG 347

  Fly   260 ERNYHIFYQLCAARSKY--PELVLDHQDKFQFLNMGGAPEIERVSDAEQFNETVQAMTVLGFSIQ 322
            ||.|||||||||..|..  ..|.:....::.:||......|:|..||::|::.::|..::....:
plant   348 ERCYHIFYQLCAGASPILKERLKIKAASEYNYLNQSNCLTIDRTDDAQKFHKLMEAFNIVQIPQE 412

  Fly   323 QIADIVKILAGILHLGNIQVSKKFNEGSEEEDSDSCDIFHNDIHLQITAD--------LLRVSAD 379
            .......:||.:|.|||:                |.::..|:.|:::.||        |:..::.
plant   413 YQERTFALLAAVLWLGNV----------------SFEVIDNENHVEVVADEAVTNVAMLMGCNSK 461

  Fly   380 DLRRWLLMRKIESVNEYVLIPNSIEAAQAARDALAKHIYAKLFQYIVGVLNKSLNNG-SKQCSFI 443
            .|...|...|:::..:.:....::..|...||:|||.|||.||.::|..:|.||..| |:....|
plant   462 KLMVVLSTCKLQAGRDCIAKRLTLRQATDMRDSLAKIIYASLFNWLVEQINISLEVGNSRTGRSI 526

  Fly   444 GVLDIYGFETFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGITWTMIDFYDNQPCIDL 508
            .:|||||||:|:.|||||||||||||:|||.||:|:||||||||..:||.||.::|.|||.|::|
plant   527 SILDIYGFESFKDNSFEQFCINYANERLQQHFNRHLFKLEQEEYEGDGIDWTKVEFIDNQECLNL 591

  Fly   509 IESR-LGVLDLLDEECRMPKGSDESWAGKLIGKCNKFPHFEKPRFGTTSFFIKHFSDTVEYDVNG 572
            ||.: :|::.||:||...||.:|.::|.||....|....|:..|  ...|.|||::..|.|:.||
plant   592 IEKKPIGLVSLLNEESNFPKATDTTFANKLKQHLNANSCFKGER--GRGFRIKHYAGEVLYNTNG 654

  Fly   573 FLEKNRDTVSKELTQVLSESNMSLAKQVMTLEEIDTLCVDSAKSSTLGGRVVISAGRKQQGNDTR 637
            |||||||.:..:|.|:||.....|.....|....|.|     |.:|.                  
plant   655 FLEKNRDPLHVDLIQLLSLCKCQLLNLFSTKMHHDFL-----KPATF------------------ 696

  Fly   638 RRVVPSKQHRKTVGSQFQESLASLISTLHATTPHYVRCIKPNDDKVAFKWETAKIIQQLRACGVL 702
                 |....::|.::|:..|..|::.|..||||::||||||.:::...:|...::||||.||||
plant   697 -----SDSMNQSVIAKFKGQLFKLMNKLEDTTPHFIRCIKPNSNQLPGLYEENHVLQQLRCCGVL 756

  Fly   703 ETVRISAAGFPSRWLYPDFYMRYQLLVYRSKLDKNDMKLSCRNIVMKWIQDEDKYRFGNTQIFFR 767
            |.||||.:|:|:|..:.:..:||..|:..:::.::.:..| :.|:.:.....:.|:.|.|:|:.|
plant   757 EIVRISRSGYPTRLTHQELAVRYGCLLLDTRISQDPLSTS-KAILKQCNLPPEMYQVGYTKIYLR 820

  Fly   768 AGQVAFLEQVRANLRKKYITIVQSVVRRFVYRRQFLRIQKVINGIQKHARGYLARERTQKMREAR 832
            .|.::.||:     ||||:.                   :.|.|:||..|||..||....||  .
plant   821 TGVISVLEE-----RKKYVL-------------------RGILGLQKQFRGYQTREYFHNMR--N 859

  Fly   833 AGLILSKYARGWLCRRRYLRLRHSISGIQTYARGMLARNKFHAMRDHYRAVQIQRFVRGALARRA 897
            |.:||..|.||...||.|:.:..|                                   |:...|
plant   860 AAVILQSYIRGENARRNYIVVGES-----------------------------------AIVSTA 889

  Fly   898 YQKRRRNIIICQAAIRRFLARRKFKRMKAEAKTISHMENKYMGLENKIISMQQRIDELNRDNSNL 962
            ..|.....|..|..:|::|||:...                        |.||:....|......
plant   890 ITKELDAAIHLQYMVRKWLARKLLN------------------------STQQKNKPRNEKKKTR 930

  Fly   963 KHKTSEISVLKMKLELKKTLEAEFK---NVKAACQDKDKLIEALNKQLEAERDEKMQLLEENGHA 1024
            :..|..:|      |.|:.|..:|:   .|.|..|.:...:||...|.|   ||...|.||....
plant   931 RKSTKRVS------EDKELLSEQFEVQPCVLADLQSRVLKVEAAIMQKE---DENTALQEELQRF 986

  Fly  1025 QEEWISQKQTWRQENEELRRQIDEIIDMAKNAEVNQRNQEDRMLAEIDNRELNEAYQRAIKDKEV 1089
            :|.|:        ||                 |...::.||.....:.:.:::            
plant   987 EERWL--------EN-----------------ETRMKSMEDTWQKHMSSMQMS------------ 1014

  Fly  1090 IENENFMLKEELSRLTAGSFSLHARKASNASSQNEDDVGYASAKNTLDINRPPDLLSKNYSYNDS 1154
                          |.|....|...|.::..:.:||         |:....|...|..:.|..::
plant  1015 --------------LAAACKVLAPDKTASHGTDSED---------TMSFGTPTKELKGSLSDVNN 1056

  Fly  1155 TSLVVKLRSILEEEKQKHKVLQEQYIKLSSRHKPTEDSFRVSELEVENEKLRSEYDQLRTSIKHG 1219
            .|.....||::..|..| .:::.:...:|:|.:..|:   :..|:...||.:.:|.......|..
plant  1057 LSTEFDQRSVIIHEDPK-SLVEVKSDSISNRKQHAEE---LRRLKSRFEKWKKDYKTRLRETKAR 1117

  Fly  1220 VEINELNAQH 1229
            |.:|....:|
plant  1118 VRLNGDEGRH 1127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
didumNP_724569.1 MYSc 65..778 CDD:214580 279/724 (39%)
MYSc_Myo5 84..767 CDD:276831 262/694 (38%)
IQ 900..922 CDD:197470 7/21 (33%)
GBP_C <971..1086 CDD:303769 23/117 (20%)
coiled coil 1049..1068 CDD:293879 3/18 (17%)
coiled coil 1077..1086 CDD:293879 0/8 (0%)
JAKMIP_CC3 <1190..1299 CDD:292653 9/40 (23%)
Myo5_CBD 1424..1792 CDD:271254
VIIIBNP_001328307.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0160
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D311886at2759
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100101
Panther 1 1.100 - - O PTHR13140
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.820

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