DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment didum and myo19

DIOPT Version :10

Sequence 1:NP_724569.1 Gene:didum / 35680 FlyBaseID:FBgn0261397 Length:1800 Species:Drosophila melanogaster
Sequence 2:NP_001122117.1 Gene:myo19 / 734140 XenbaseID:XB-GENE-999897 Length:969 Species:Xenopus tropicalis


Alignment Length:933 Identity:309/933 - (33%)
Similarity:460/933 - (49%) Gaps:161/933 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 NDLTTLSYLHEPGVLHNLRVRFCERQIIYTYCGIILVAINPYAEM-PLYGPSIIRAYRGHAMGD- 135
            :|||.::.:....||..|:.|: ...:.||..|..:||:||:..: .||...:::.|  ||..: 
 Frog    46 DDLTKVNPVTTATVLKCLQARY-SAGVFYTNAGCTVVAVNPFRPVCKLYSSEVMKEY--HAASNP 107

  Fly   136 --LEPHIFALAEEAYTKLER--ENCNLSIIVSGESGAGKTVSAKYAMRYFAAVGGS------ESE 190
              .:||||.:||:||..::.  :..|.|||||||||||||.:::..|:::|.|..|      |..
 Frog   108 QGCKPHIFTVAEQAYKNVQSQIQPVNQSIIVSGESGAGKTWTSRCLMKFYATVSASRCYITNEMV 172

  Fly   191 TQVERKVLASSPIMEAFGNAKTTRNDNSSRFGKFTKL-LFRNQMGVMFLQGATMHTYLLEKSRVV 254
            .::|.:||.|:|:|||||||.|.||.|||||||:.:| |.|.|.    :.||::.||||||:||.
 Frog   173 ERIESRVLDSNPVMEAFGNACTLRNHNSSRFGKYIQLQLNRTQQ----ITGASIQTYLLEKTRVA 233

  Fly   255 YQAQGERNYHIFYQLC--AARSKYPELVLDHQDKFQFLNMGGAPEIERVSDAEQFNETVQAMTVL 317
            :||..|||:|||||:.  |:|.:..|..|..:..|.:|     |..|...:.:.|..|..||..|
 Frog   234 HQAPLERNFHIFYQVVKGASRHEREEWNLPEKANFSWL-----PNYENNLEEDDFEVTKDAMLHL 293

  Fly   318 GFSIQQIADIVKILAGILHLGNIQVSKKFNEGSEEEDSDSCD-IFHNDIHLQITADLLRVSADDL 381
            |.......:|.|||:|:|||||||.|...:|      |..|: :.:......:.|.||::....|
 Frog   294 GIDQTTQNNIFKILSGLLHLGNIQFSDSVDE------SQPCEPLNYTQEFASVAASLLKIPVSHL 352

  Fly   382 RRWLLMRKIESVNEYVL-IPNSIEAAQAARDALAKHIYAKLFQYIVGVLNKSL-------NNGSK 438
            ...|.:|.|.:..:.|. .|.........||.|||.|||:||:::|.|:|:::       ||   
 Frog   353 LERLSIRTITAGKQQVFKKPCRKSECDTRRDCLAKTIYARLFEWLVTVINENICAEAYRWNN--- 414

  Fly   439 QCSFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGITWTMIDFYDNQ 503
               |||:||:||||:|..|:.||.|||||||||||.|..|..|.:|:||..||:.|:.|.:.|||
 Frog   415 ---FIGLLDVYGFESFPENNLEQLCINYANEKLQQHFVSHYLKSQQDEYAAEGLEWSFISYQDNQ 476

  Fly   504 PCIDLIE-SRLGVLDLLDEECRMPKGSDESWAGKL-------------IGKCNKFPHFEKPRFGT 554
            .|:|||| |.:.:..||:||||:.:.||   ||:|             ||: :||.  :||    
 Frog   477 SCVDLIEGSPISIFSLLNEECRLNRSSD---AGQLQSRLEKALSHNKSIGR-DKFS--KKP---- 531

  Fly   555 TSFFIKHFSDTVEYDVNGFLEKNRDTVSKELTQVLSESNMSLAKQVMTLEEIDTLCVDSAKSSTL 619
             :|.:.|::..|:|.:....|||:|.|..||.|:|.||:..|.:.:..:|               
 Frog   532 -NFIVSHYAGKVQYQIEDMAEKNKDPVPPELIQLLQESDDHLLQILFPVE--------------- 580

  Fly   620 GGRVVISAGRKQQGNDTRRRVVPSKQHRKTVGSQFQESLASLISTLHATTPHYVRCIKPNDDKVA 684
            ..:.|..|        |..|.|     ..||.|:|:.||.||:..||:|||||:||||||.|..|
 Frog   581 NNKPVYGA--------TNNRAV-----GVTVVSKFKGSLESLMQILHSTTPHYIRCIKPNVDCQA 632

  Fly   685 FKWETAKIIQQLRACGVLETVRISAAGFPSRWLYPDFYMRYQLLVYR------------------ 731
            ..:...:::.||.|||::||:.|||||||.|..:..|..||.::..|                  
 Frog   633 LVFRQEEVLMQLEACGIVETINISAAGFPIRISFESFVERYSVIAPRQIHMENNFNDCLFLKKKQ 697

  Fly   732 --SKLDKNDMKLS--CRNIVMKWIQD----EDKYRFGNTQIFFRAGQVAFLEQVRANLRKKYITI 788
              .|.|:...||.  ...::.|..:|    ......|.|::|.....|..||:.|..........
 Frog   698 GFEKTDQLPSKLQTILHAVLSKLCKDSTLSNTLVHCGTTKVFLTHLMVELLEERRLEAICSKAVC 762

  Fly   789 VQSVVRRFVYRRQFLRIQKVINGIQKHARGYLARERTQKMREARAGLILSKYARGWLCRRRYLRL 853
            :|...||: .:|:..:..:....||...:|:|.::..::|.  .|..::.:..:.|..:...|..
 Frog   763 IQCCWRRY-RQRKLAKQNRAATTIQAAVKGWLTKKYIERMH--NAATVIKRIWKKWKEKMEALAA 824

  Fly   854 RHSISGIQTYARGML--------------ARNKFHAMRDH-------------YRAVQIQRFVRG 891
            ......|:...|.:|              ..|....:..|             |:|..|::::  
 Frog   825 AELDDSIEDVERTLLLSVPASPVKTLESPKTNLQDKLLTHSAILKFGTLGLVLYKAPAIRKYI-- 887

  Fly   892 ALARRAYQKRRRNIIICQAAIRR 914
              ......||.:||::|...:.|
 Frog   888 --VETDELKRNQNILMCLNVLHR 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
didumNP_724569.1 MYSc_Myo5 84..767 CDD:276831 276/746 (37%)
IQ 900..922 CDD:197470 6/15 (40%)
SMC_prok_B <942..1365 CDD:274008
Myo5_CBD 1424..1792 CDD:271254
myo19NP_001122117.1 MYSc_Myo19 57..741 CDD:276846 276/746 (37%)
Adgb_C_mid-like <765..>824 CDD:412094 11/61 (18%)
IQCD 771..>796 CDD:467745 5/24 (21%)
IQ motif 783..802 CDD:412094 4/18 (22%)
globin helix A 804..819 CDD:412094 2/14 (14%)
Blue background indicates that the domain is not in the aligned region.

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