DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment didum and myo19

DIOPT Version :9

Sequence 1:NP_724569.1 Gene:didum / 35680 FlyBaseID:FBgn0261397 Length:1800 Species:Drosophila melanogaster
Sequence 2:NP_001122117.1 Gene:myo19 / 734140 XenbaseID:XB-GENE-999897 Length:969 Species:Xenopus tropicalis


Alignment Length:933 Identity:309/933 - (33%)
Similarity:460/933 - (49%) Gaps:161/933 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 NDLTTLSYLHEPGVLHNLRVRFCERQIIYTYCGIILVAINPYAEM-PLYGPSIIRAYRGHAMGD- 135
            :|||.::.:....||..|:.|: ...:.||..|..:||:||:..: .||...:::.|  ||..: 
 Frog    46 DDLTKVNPVTTATVLKCLQARY-SAGVFYTNAGCTVVAVNPFRPVCKLYSSEVMKEY--HAASNP 107

  Fly   136 --LEPHIFALAEEAYTKLER--ENCNLSIIVSGESGAGKTVSAKYAMRYFAAVGGS------ESE 190
              .:||||.:||:||..::.  :..|.|||||||||||||.:::..|:::|.|..|      |..
 Frog   108 QGCKPHIFTVAEQAYKNVQSQIQPVNQSIIVSGESGAGKTWTSRCLMKFYATVSASRCYITNEMV 172

  Fly   191 TQVERKVLASSPIMEAFGNAKTTRNDNSSRFGKFTKL-LFRNQMGVMFLQGATMHTYLLEKSRVV 254
            .::|.:||.|:|:|||||||.|.||.|||||||:.:| |.|.|.    :.||::.||||||:||.
 Frog   173 ERIESRVLDSNPVMEAFGNACTLRNHNSSRFGKYIQLQLNRTQQ----ITGASIQTYLLEKTRVA 233

  Fly   255 YQAQGERNYHIFYQLC--AARSKYPELVLDHQDKFQFLNMGGAPEIERVSDAEQFNETVQAMTVL 317
            :||..|||:|||||:.  |:|.:..|..|..:..|.:|     |..|...:.:.|..|..||..|
 Frog   234 HQAPLERNFHIFYQVVKGASRHEREEWNLPEKANFSWL-----PNYENNLEEDDFEVTKDAMLHL 293

  Fly   318 GFSIQQIADIVKILAGILHLGNIQVSKKFNEGSEEEDSDSCD-IFHNDIHLQITADLLRVSADDL 381
            |.......:|.|||:|:|||||||.|...:|      |..|: :.:......:.|.||::....|
 Frog   294 GIDQTTQNNIFKILSGLLHLGNIQFSDSVDE------SQPCEPLNYTQEFASVAASLLKIPVSHL 352

  Fly   382 RRWLLMRKIESVNEYVL-IPNSIEAAQAARDALAKHIYAKLFQYIVGVLNKSL-------NNGSK 438
            ...|.:|.|.:..:.|. .|.........||.|||.|||:||:::|.|:|:::       ||   
 Frog   353 LERLSIRTITAGKQQVFKKPCRKSECDTRRDCLAKTIYARLFEWLVTVINENICAEAYRWNN--- 414

  Fly   439 QCSFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGITWTMIDFYDNQ 503
               |||:||:||||:|..|:.||.|||||||||||.|..|..|.:|:||..||:.|:.|.:.|||
 Frog   415 ---FIGLLDVYGFESFPENNLEQLCINYANEKLQQHFVSHYLKSQQDEYAAEGLEWSFISYQDNQ 476

  Fly   504 PCIDLIE-SRLGVLDLLDEECRMPKGSDESWAGKL-------------IGKCNKFPHFEKPRFGT 554
            .|:|||| |.:.:..||:||||:.:.||   ||:|             ||: :||.  :||    
 Frog   477 SCVDLIEGSPISIFSLLNEECRLNRSSD---AGQLQSRLEKALSHNKSIGR-DKFS--KKP---- 531

  Fly   555 TSFFIKHFSDTVEYDVNGFLEKNRDTVSKELTQVLSESNMSLAKQVMTLEEIDTLCVDSAKSSTL 619
             :|.:.|::..|:|.:....|||:|.|..||.|:|.||:..|.:.:..:|               
 Frog   532 -NFIVSHYAGKVQYQIEDMAEKNKDPVPPELIQLLQESDDHLLQILFPVE--------------- 580

  Fly   620 GGRVVISAGRKQQGNDTRRRVVPSKQHRKTVGSQFQESLASLISTLHATTPHYVRCIKPNDDKVA 684
            ..:.|..|        |..|.|     ..||.|:|:.||.||:..||:|||||:||||||.|..|
 Frog   581 NNKPVYGA--------TNNRAV-----GVTVVSKFKGSLESLMQILHSTTPHYIRCIKPNVDCQA 632

  Fly   685 FKWETAKIIQQLRACGVLETVRISAAGFPSRWLYPDFYMRYQLLVYR------------------ 731
            ..:...:::.||.|||::||:.|||||||.|..:..|..||.::..|                  
 Frog   633 LVFRQEEVLMQLEACGIVETINISAAGFPIRISFESFVERYSVIAPRQIHMENNFNDCLFLKKKQ 697

  Fly   732 --SKLDKNDMKLS--CRNIVMKWIQD----EDKYRFGNTQIFFRAGQVAFLEQVRANLRKKYITI 788
              .|.|:...||.  ...::.|..:|    ......|.|::|.....|..||:.|..........
 Frog   698 GFEKTDQLPSKLQTILHAVLSKLCKDSTLSNTLVHCGTTKVFLTHLMVELLEERRLEAICSKAVC 762

  Fly   789 VQSVVRRFVYRRQFLRIQKVINGIQKHARGYLARERTQKMREARAGLILSKYARGWLCRRRYLRL 853
            :|...||: .:|:..:..:....||...:|:|.::..::|.  .|..::.:..:.|..:...|..
 Frog   763 IQCCWRRY-RQRKLAKQNRAATTIQAAVKGWLTKKYIERMH--NAATVIKRIWKKWKEKMEALAA 824

  Fly   854 RHSISGIQTYARGML--------------ARNKFHAMRDH-------------YRAVQIQRFVRG 891
            ......|:...|.:|              ..|....:..|             |:|..|::::  
 Frog   825 AELDDSIEDVERTLLLSVPASPVKTLESPKTNLQDKLLTHSAILKFGTLGLVLYKAPAIRKYI-- 887

  Fly   892 ALARRAYQKRRRNIIICQAAIRR 914
              ......||.:||::|...:.|
 Frog   888 --VETDELKRNQNILMCLNVLHR 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
didumNP_724569.1 MYSc 65..778 CDD:214580 282/768 (37%)
MYSc_Myo5 84..767 CDD:276831 276/746 (37%)
IQ 900..922 CDD:197470 6/15 (40%)
GBP_C <971..1086 CDD:303769
coiled coil 1049..1068 CDD:293879
coiled coil 1077..1086 CDD:293879
JAKMIP_CC3 <1190..1299 CDD:292653
Myo5_CBD 1424..1792 CDD:271254
myo19NP_001122117.1 MYSc 45..752 CDD:214580 282/768 (37%)
MYSc_Myo19 57..741 CDD:276846 276/746 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D311886at2759
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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