DRSC/TRiP Functional Genomics Resources

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Protein Alignment didum and myo1b

DIOPT Version :9

Sequence 1:NP_724569.1 Gene:didum / 35680 FlyBaseID:FBgn0261397 Length:1800 Species:Drosophila melanogaster
Sequence 2:XP_005168005.1 Gene:myo1b / 541515 ZFINID:ZDB-GENE-030131-695 Length:1167 Species:Danio rerio


Alignment Length:1170 Identity:348/1170 - (29%)
Similarity:579/1170 - (49%) Gaps:163/1170 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 LVGQNDLTTLSYLHEPGVLHNLRVRFCERQIIYTYCGIILVAINPYAEMPLYGPSIIRAYRGHAM 133
            ::|..|:..|..|.|...:.||:.|| :...||||.|.:::::|||..:.:|....:..||....
Zfish    11 MIGVGDMVLLEPLSEESFIENLKKRF-DHNEIYTYIGSVVISMNPYKSLSIYSAEKVEEYRNRNF 74

  Fly   134 GDLEPHIFALAEEAYTKLERENCNLSIIVSGESGAGKTVSAKYAMRYFAAVGGSESE-TQVERKV 197
            .:|.|||:|||:|||..|..::.:..|:::||||||||.::|:.|.|.|||.|...| .:|:.::
Zfish    75 YELSPHIYALADEAYRSLRHQDKDQCILITGESGAGKTEASKFVMSYVAAVCGKGQEVNKVKEQL 139

  Fly   198 LASSPIMEAFGNAKTTRNDNSSRFGKFTKLLFRNQMGVMFLQGATMHTYLLEKSRVVYQAQGERN 262
            |.|:|::||||||||.||||||||||:..:.|..:...:   |..:..|||||||||.|.:||||
Zfish   140 LQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPL---GGVISNYLLEKSRVVKQPRGERN 201

  Fly   263 YHIFYQLCAARS--KYPELVLDHQ-DKFQFLNMGGAPEIERVSDAEQFNETVQAMTVLGFSIQQI 324
            :||||||.:..|  ...:|.||.. .|:.:|::..| .:..:.||..|.....||.::||...::
Zfish   202 FHIFYQLLSGASDDMLKKLKLDRDFSKYNYLSLDSA-TVNGLDDAASFRTVRNAMQIVGFMEDEV 265

  Fly   325 ADIVKILAGILHLGNIQVSKK-----FNEGSEEEDSDSCDIFHNDIHLQITADLLRVSADDLRRW 384
            ..|::::|.:|.||||:...:     |:|...::.:|          |:...:||.:....|.|.
Zfish   266 QSILELIAAVLKLGNIEFKPESRVNGFDESRVKDKND----------LKEMCELLGIEQSVLERA 320

  Fly   385 LLMRKIESVNEYVLIPNSIEAAQAARDALAKHIYAKLFQYIVGVLNKSLNNGSK-QCSFIGVLDI 448
            ...|.:|:..|.|....::..|..|||||||::|::||.::|..:|:|:...:| :...:|||||
Zfish   321 FSFRTVEAKMEKVSTTLNVAQAYYARDALAKNLYSRLFTWLVNRINESIKAQTKTRKKVMGVLDI 385

  Fly   449 YGFETFE--VNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGITWTMIDFYDNQPCIDLIE- 510
            ||||.||  .||||||.|||.||||||.|.:...:.|||||::|||.||.|::::|....|||| 
Zfish   386 YGFEIFENGDNSFEQFIINYCNEKLQQIFIELTLREEQEEYIREGIEWTNIEYFNNAIICDLIEN 450

  Fly   511 SRLGVLDLLDEECRMP-KGSDESWAGKLIGKCNKFPHFE-----KPRFGT------TSFFIKHFS 563
            ::.|:|.:|||||..| ..:||::..||...|.:..|||     ..:|.|      ..|.|:|::
Zfish   451 NKNGILAMLDEECLRPGTVTDETFLDKLNTVCAEHQHFESRLSKNSKFLTDHSLPHNCFRIQHYA 515

  Fly   564 DTVEYDVNGFLEKNRDTVSKELTQVLSESNMSLAKQVMTLEEIDTLCVDSAKSSTLGGRVVISAG 628
            ..|.|.|.||::||.|.:.::|:|.:.::|.:|.|.:.                           
Zfish   516 GKVLYRVEGFVDKNNDLLYRDLSQAMYKANHNLIKLLF--------------------------- 553

  Fly   629 RKQQGNDTRRRVVPSKQHRK---TVGSQFQESLASLISTLHATTPHYVRCIKPNDDKVAFKWETA 690
              .:||       |:|.:.|   |.|.||:.|:.:|:..|....|:|:|||||||.|.|..:..:
Zfish   554 --PEGN-------PAKVNLKRPPTAGFQFRASVGTLMKNLLTKNPNYIRCIKPNDKKAAHIFTDS 609

  Fly   691 KIIQQLRACGVLETVRISAAGFPSRWLYPDFYMRYQLLVYRSKLDKNDMKLSCRNIVMKW----- 750
            .:..|:|..|::|.||:..||:..|..|.....||::|              |:.....|     
Zfish   610 LVCHQVRYLGLMENVRVRRAGYAFRQAYEPCLERYKML--------------CKQTWPHWKGPAR 660

  Fly   751 ------IQD----EDKYRFGNTQIFFRAGQ-VAFLEQVRANLRKKYITIVQSVVRRFVYRRQFLR 804
                  :.|    .:::.:|.::||.|..: :.|||:.|....:....::|.:.|.:..|..||.
Zfish   661 EGVEVLLSDLQVPAEEFAYGRSKIFIRNPRTLFFLEEKRRQCLEDLAALIQKIYRGWKCRTHFLL 725

  Fly   805 IQKVINGIQKHARGYLARERTQKMREARAGLILSKYARGWLCRRRYLRLRH------SISGIQTY 863
            ::|....:....|.:..:::.||:|  .:.|::..:.|||..|:....|:|      :::.|..|
Zfish   726 LKKSQVVVAAWYRRFAQQKKYQKIR--CSALVVQSFIRGWKARKLLRELKHKKRCEEAVTTISAY 788

  Fly   864 -----ARGMLARNKFHAMRDHYRAVQIQRFVRGALARRAYQK------RRRNIIICQAAIRRFLA 917
                 ||..|.|.|..|...|..:| |.....|..|||..||      .::.:.:..|..:...|
Zfish   789 WHGTQARWELRRLKKEAWNKHAVSV-IWAAWLGTKARRELQKLKHEACSKQAVSVIWACWQGTKA 852

  Fly   918 RRKFKRMKAEAK---TISHMENKYMGLENKIISMQQRIDELNRDNSNLK--HKTSEISVLKMKLE 977
            ||:.||:|.||:   .|:.:...::||:     :::...:..|.|:..|  ..|.:..:.|..|.
Zfish   853 RRELKRLKEEARRKHAIAVIWAYWLGLK-----VRREYRKFFRANAGKKIYDFTIQRIIQKYYLG 912

  Fly   978 LKKTLEAEFKNVKAACQDKDKLIEALNKQLEAE------RDEKMQLLEENGHAQEEWISQKQTWR 1036
            ||||:.:.....|:........::..:::|...      :..:.|..||.....||.::..:.::
Zfish   913 LKKTMPSMSPIDKSWSTCPYGFLDGTHQELRRIFHLWRCKKYRSQFTEEKKATYEEKLAASELFK 977

  Fly  1037 QENEELRRQID-----EIIDMAKNAEVNQRNQ--EDR-MLAEIDNRELNEAYQRAIKDKEVIENE 1093
            .:.......:.     :.:::.||.:..:.|.  ||: :||::.:: :|.|..:......::..:
Zfish   978 DKKALYPSSVSQPFKGDYVEITKNPKYQKLNSLVEDKVLLADVVSK-INRANGKGTPRIFLLTKK 1041

  Fly  1094 NFMLKEELSRLTAGSFSLHARKASNASSQN---------EDDVGYASAKNTLDINRPPDLLSKNY 1149
            ..:|.::.:.....|..|....:...|:||         |.....|.....|..:|..::::|.|
Zfish  1042 CLVLADQKTGQVKASVPLPDLSSVFVSTQNDGFFALKLREGATSAAKGDYLLSSDRLIEIITKLY 1106

  Fly  1150  1149
            Zfish  1107  1106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
didumNP_724569.1 MYSc 65..778 CDD:214580 263/752 (35%)
MYSc_Myo5 84..767 CDD:276831 254/725 (35%)
IQ 900..922 CDD:197470 5/27 (19%)
GBP_C <971..1086 CDD:303769 22/128 (17%)
coiled coil 1049..1068 CDD:293879 5/21 (24%)
coiled coil 1077..1086 CDD:293879 2/8 (25%)
JAKMIP_CC3 <1190..1299 CDD:292653
Myo5_CBD 1424..1792 CDD:271254
myo1bXP_005168005.1 MYSc 13..700 CDD:214580 263/751 (35%)
MYSc_Myo1 26..687 CDD:276829 254/725 (35%)
Myosin_TH1 969..1142 CDD:283635 21/139 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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