DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment didum and jar

DIOPT Version :9

Sequence 1:NP_724569.1 Gene:didum / 35680 FlyBaseID:FBgn0261397 Length:1800 Species:Drosophila melanogaster
Sequence 2:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster


Alignment Length:1466 Identity:396/1466 - (27%)
Similarity:640/1466 - (43%) Gaps:383/1466 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 NDLTTLSYLHEPGVLHNLRVRFCERQIIYTYCGIILVAINPYAEM-PLYGPSIIRAYRGHAMGDL 136
            :|...|..|:|...|.||:.|:.:.: ||||...||:|:|||.|: .||.|..|:.|.|.::|:|
  Fly    60 DDNCELMLLNEATFLDNLKTRYYKDK-IYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLGEL 123

  Fly   137 EPHIFALAEEAYTKLERENCNLSIIVSGESGAGKTVSAKYAMRYFAAVGGSESETQVERKVLASS 201
            .||:||:|::|...:.....:.|||||||||||||.|.||.::|...  ..:|...:|.|:|.::
  Fly   124 PPHVFAIADKAIRDMRVYKLSQSIIVSGESGAGKTESTKYLLKYLCY--SHDSAGPIETKILDAN 186

  Fly   202 PIMEAFGNAKTTRNDNSSRFGKFTKLLFRNQMGVMFLQGATMHTYLLEKSRVVYQAQGERNYHIF 266
            |::|||||||||||:||||||||.::.:..:..|:   |..:..|||||||:..|:..|||||:|
  Fly   187 PVLEAFGNAKTTRNNNSSRFGKFIEVHYDAKCQVV---GGYISHYLLEKSRICTQSAEERNYHVF 248

  Fly   267 YQLCAARSKY--PELVLDHQDKFQFLN--------------MGGAPEIER-----------VSDA 304
            |.|.|...:.  .:|.|...|.:::|:              :.|:.:.:.           :.|.
  Fly   249 YMLLAGAPQQLRDKLSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPIIDDY 313

  Fly   305 EQFNETVQAMTVLGFSIQQIADIVKILAGILHLGNIQVSK---------KFNEGSEEEDSDSCDI 360
            :.|:...:|:..||.|..:...|..::|.:||||||...:         :.:|.||:.       
  Fly   314 QHFHNLDKALGRLGLSDTEKLGIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQS------- 371

  Fly   361 FHNDIHLQITADLLRVSADDLRRWLLMRKIES-----VNEYVLIPNSIEAAQAARDALAKHIYAK 420
                  |.||:.||.|...:||..|:.|.::|     ....:::|..|..|..|||||||.||::
  Fly   372 ------LTITSGLLGVDQTELRTALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSR 430

  Fly   421 LFQYIVGVLNKSLNNGSKQCS--FIGVLDIYGFETFEVNSFEQFCINYANEKLQQQFNQHVFKLE 483
            ||..|||::|:|:   ..|.|  :||||||.|||.|.|||||||||||.|||||:.||.::.|.|
  Fly   431 LFDRIVGLINQSI---PFQASNFYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNE 492

  Fly   484 QEEYLKEGITWTMIDFYDNQPCIDLIESRL-GVLDLLDEECRMPKGS--------DESWAGKL-I 538
            ||.|.:||:....|.|.|||..|:|||::. |:..|||||.::||.|        .:|||... :
  Fly   493 QELYKREGLNVPEITFTDNQDIIELIEAKSNGIFTLLDEESKLPKPSYSHFTAEVHKSWANHYRL 557

  Fly   539 GKCNKFPHFEKPRFGTT-----SFFIKHFSDTVEYDVNGFLEKNRDTVSKELTQVLSESNMSLAK 598
            |    .|...:.:...|     .|.::||:..|.|:...|:|||.|.:...|..::.|.:..|  
  Fly   558 G----LPRSSRLKAHRTLRDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPL-- 616

  Fly   599 QVMTLEEIDTLCVDSAKSSTLGGRVVISAGRKQQGNDTRRRVVPSKQHRKTVGSQFQESLASLIS 663
                   :.||....:.:|..|....||                       |||:|:..|..|:.
  Fly   617 -------LQTLFPSGSSTSVRGKLNFIS-----------------------VGSKFKTQLGELME 651

  Fly   664 TLHATTPHYVRCIKPNDDKVAFKWETAKIIQQLRACGVLETVRISAAGFPSRWLYPDFYMRYQLL 728
            .|.....:::||||||...:..::|.:..:.||:..|.:..:.:...|:|||.|:.|.|.     
  Fly   652 KLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQLKCSGTISVLELMEHGYPSRVLFADLYS----- 711

  Fly   729 VYRSKLDKNDMKLSCRNIVMKWIQ----DEDKYRFGNTQIFFRAGQVAFLEQVRANLRKKYITIV 789
            :|:|.|....:.|..|.......|    ....::||.|::|||.|:....:::..:..:..:.||
  Fly   712 MYKSVLPPELVSLPARTFCEAMFQSLNLSAKDFKFGITKVFFRPGKFVEFDRIMRSDPENMLAIV 776

  Fly   790 QSVVRRFVYRRQFLRIQKVINGIQKHARGYLARERTQKMREARAGLILSKYARGWLCRRRYLRLR 854
             :.|::::.|.:::                                   |.|.|.||   .::||
  Fly   777 -AKVKKWLIRSRWV-----------------------------------KSALGALC---VIKLR 802

  Fly   855 HSISGIQTYARGMLARNKFHAMRDHYRAVQI-QRFVRGALARRAYQKRRRNIIICQAAIRRFLAR 918
            :.|          :.|||         .|.| ||..||.|||:.::.|.:.|             
  Fly   803 NRI----------IYRNK---------CVLIAQRIARGFLARKQHRPRYQGI------------- 835

  Fly   919 RKFKRMKAEA-KTISHMENKYMGLENKIIS----MQQRIDELNRDNSNLKHKTSEISVLKMKLE- 977
            .|..:::... |||.......||.| :|||    :.::||:               ::.|:|:. 
  Fly   836 GKINKIRTNTLKTIEIASGLKMGRE-EIISGVNDIYRQIDD---------------AIKKIKMNP 884

  Fly   978 --LKKTLEAEFKNVKAACQDKDKLIEALN----KQLEAERDEKMQLLEENGHAQ---EEWISQKQ 1033
              .::.:::.:..|.|   :.:||...||    :|.:||..|:::.::|...|:   :|...|:|
  Fly   885 RITQREMDSMYTVVMA---NMNKLTVDLNTKLKEQQQAEEQERLRKIQEALEAERAAKEAEEQRQ 946

  Fly  1034 TWRQENEELRRQIDEIIDMAKNAEVNQRNQEDRMLAEIDNRELNEAYQRAIKDKEVIENENFMLK 1098
            ....||:.|:.:::   ...|.||..:..||:      ::|....|.|..: :||..::..:..:
  Fly   947 REEIENKRLKAEME---TRRKAAEAQRLRQEE------EDRRAALALQEQL-EKEAKDDAKYRQQ 1001

  Fly  1099 EELSRLTAGSFSLHARKASNASSQNEDDVGYASAKNTLDINRPPDLLSKNYSYNDSTSLVVKLRS 1163
            .|..|   ....|..|.|:.::.|.||.              ||.:.:   ..||::.:      
  Fly  1002 LEQER---RDHELALRLANESNGQVEDS--------------PPVIRN---GVNDASPM------ 1040

  Fly  1164 ILEEEKQKHKVLQEQYI--KLSSRHKPTEDSFRVSELEVENEKL---RSEYDQLRTSIKHGVEIN 1223
                  ..:|::....:  .::||:....::.|..:..:..:|.   :.:|.:||.:|....:|.
  Fly  1041 ------GPNKLISFSQVVSNIASRYLNKSENVRAQQQALGKQKYDLSKWKYSELRDAINTSCDIE 1099

  Fly  1224 ELNAQHAALQEEVRRRREECIQLKAVLLQQSQSMRSLEPESLQMRGNDVNELMEAFHSQKLINRQ 1288
            .|.    |.::|..||                                    ::.:|:.|..|| 
  Fly  1100 LLE----ACRQEFHRR------------------------------------LKVYHAWKAKNR- 1123

  Fly  1289 LESELKAITEEHNSK--------------LVEMTQEI------------ERLN---NEKDELQKV 1324
                 |..|.:.|.:              ||:..|||            .|.|   |.|..|...
  Fly  1124 -----KRTTMDENERAPRSVMEAAFKQPPLVQPIQEIVTAQHRYFRIPFMRANAPDNTKRGLWYA 1183

  Fly  1325 MFESIDEFEDSNVDTLRQNDRYLRR--ELQKAVAQFLLV--QEELKLANAKLK---AYRQDGGQ- 1381
            .|:.                :::.|  ||.......|||  .:::::....|:   ..|:.|.: 
  Fly  1184 HFDG----------------QWIARQMELHADKPPILLVAGTDDMQMCELSLEETGLTRKRGAEI 1232

  Fly  1382 LEHKIEEEMIRN-----KSNGTSADVGANVTKQKSQ 1412
            |||:...|..||     |:.|.:...|.....||.|
  Fly  1233 LEHEFNREWERNGGKAYKNLGAAKPNGPAAAMQKQQ 1268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
didumNP_724569.1 MYSc 65..778 CDD:214580 262/767 (34%)
MYSc_Myo5 84..767 CDD:276831 255/745 (34%)
IQ 900..922 CDD:197470 3/21 (14%)
GBP_C <971..1086 CDD:303769 28/124 (23%)
coiled coil 1049..1068 CDD:293879 5/18 (28%)
coiled coil 1077..1086 CDD:293879 2/8 (25%)
JAKMIP_CC3 <1190..1299 CDD:292653 18/111 (16%)
Myo5_CBD 1424..1792 CDD:271254
jarNP_001014650.2 Myosin_N 7..45 CDD:280832
Myosin_head 59..754 CDD:278492 259/756 (34%)
MYSc_Myo6 71..754 CDD:276833 255/745 (34%)
RILP-like <968..1015 CDD:304877 10/56 (18%)
Myosin-VI_CBD 1160..1246 CDD:293129 21/101 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466257
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1389at50557
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR13140
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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