DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment didum and Aspm

DIOPT Version :9

Sequence 1:NP_724569.1 Gene:didum / 35680 FlyBaseID:FBgn0261397 Length:1800 Species:Drosophila melanogaster
Sequence 2:NP_001099425.2 Gene:Aspm / 289054 RGDID:1307111 Length:3133 Species:Rattus norvegicus


Alignment Length:1626 Identity:296/1626 - (18%)
Similarity:527/1626 - (32%) Gaps:573/1626 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 RAYRGHAM-GDLEPHIFALAEEAYTKLERENCNLSIIVSGESGAGKTVSAKYAMRYFAAVGGSES 189
            |.||.|.: .|:..| |....||...|:                             :|..|.:.
  Rat  1832 RWYRAHKVASDMRIH-FLKTREAVVVLQ-----------------------------SACRGWQV 1866

  Fly   190 ETQVERKVLASSPIMEAFGNAKTTRNDNSSRFGKFTKLLFRNQMGVMFLQ-------GATMHT-Y 246
            ..|:.|:..|:..|..||..|:..|...          |.|| ..|:..|       |...|: |
  Rat  1867 RQQLRRQHQAAVKIQAAFRMARAQRQYK----------LVRN-AAVVIQQHVRARAAGERQHSEY 1920

  Fly   247 L-LEKSRVVYQAQ----------GERN-----YHIFYQLCAARSKYPELVLDHQDKFQFLNMGGA 295
            : |..:.:|:||.          .:|:     ...:|::.:.|.|:.            |....|
  Rat  1921 IRLRHAALVFQATWKGKMLRREIAQRHQCAALIQSYYRMYSQRRKWS------------LMKTAA 1973

  Fly   296 PEIE------RVSDAEQ--FNETVQAMTVLGFSI------QQIADIVKILAGILHLGNIQVSKKF 346
            .:|:      ||...::  :.:|..|:.:|..:.      :||.:        .|...:.:..||
  Rat  1974 RQIQVCYRAYRVGKEQRHLYLKTKAAVVILQSAYRGMKARRQITE--------CHKAAVTIQSKF 2030

  Fly   347 NEGSEEEDSDSCDIFHNDIHLQITADLLRVSADDLRRWLLMRKI--ESVNEYVLIPNSIEAAQAA 409
            .....::...:|                |.||..::||....||  :....|:.:..:....||.
  Rat  2031 RAYRTQKKYTTC----------------RTSAIIIQRWYRNIKITTQQREAYLTLKRAATKVQAV 2079

  Fly   410 RDAL--AKHIYAKLFQYIVGVLNKSLNNGSKQCSFIGVLDIYGFETFEVNSFEQFCINYANEKLQ 472
            ...:  .:||.   ..|:...|.|:|                    |::..      :.|...:|
  Rat  2080 YRGIQVRRHIQ---HMYMAATLIKAL--------------------FKIQQ------SRAAAVIQ 2115

  Fly   473 QQFNQHVF-KLEQEEYLKEGITWTMIDFYDNQPCIDLIESRLGVLDLLDEECRMPKGSDESWAGK 536
            .::..:.. |::||:||                      :.|..:..|....|          |.
  Rat  2116 VRYRAYYLGKIQQEKYL----------------------TTLRAIKTLQAGVR----------GA 2148

  Fly   537 LIGKCNKFPHFEKPRFGTTSFFIKHFSDTVEYDVNGFLEKNRDTVSKELTQVLSESNMSLAKQVM 601
            .:.|..:..||.....  .|:|.:|...|..:.:     :...||.::..:.:.|.:...     
  Rat  2149 RVRKTLRKMHFAATLI--QSYFRRHRQRTYFHRL-----RKAATVVQQRYRAVKEGSSQF----- 2201

  Fly   602 TLEEIDTLCVDSAKSSTLGGRVVISAGRKQQGNDTRRRVVPSKQHRKTVGSQFQESLASLISTLH 666
                                         |:.:..||.|:           ..|.:...|.:..|
  Rat  2202 -----------------------------QRYSRLRRSVI-----------LVQAAFRGLKARRH 2226

  Fly   667 ATTPHYVRCIKPNDDKVAFKWETAKIIQQLRACGVLETVRISAAGFPSRWLYPDFYMRYQLLVYR 731
            ....|.                .|.:||:                            |::.|:.|
  Rat  2227 LKAMHL----------------AATVIQR----------------------------RFRTLLMR 2247

  Fly   732 SKLDKNDMKLSCRNIVMKWIQDEDKYRFGNTQIFFRAGQVAFLEQVRANLRKKYITIVQSVVRRF 796
            .|.      ||.|..|: |||                      .|.||.|..||.          
  Rat  2248 RKF------LSLRKTVI-WIQ----------------------RQYRARLHAKYC---------- 2273

  Fly   797 VYRRQFLRIQKVINGIQKHARGYLARERTQKMREARAGLILSKYARGWLCRRRYLRLRHSISGIQ 861
               ||.|.::|.:..||...:|::.|:..|||..| |.:|.:.:.....| .||.||:.:...||
  Rat  2274 ---RQQLLLEKAVTKIQSSYKGWMVRKSVQKMHRA-ATVIQATFRMHRAC-VRYQRLKRASVVIQ 2333

  Fly   862 TYARGMLARNKFHAMRDHYRAVQIQR--FVRGALARRAYQKRRRNIIICQAAIRRFLARRKFKRM 924
            ...|.             :|..::||  |||          :|:..:..|||.|...||...|.|
  Rat  2334 KQYRA-------------HRTAELQRQLFVR----------QRQAALTLQAAFRGVKARNHLKTM 2375

  Fly   925 KAEAKTISH------MENKYMGLENKIISMQQRIDELNRDNSNLKHKTSEISVLKMKLELKK--- 980
            .|.|..|..      :..:::.|....|.:|::.    |.....|||      |...|:|:|   
  Rat  2376 HASATLIQSKFRARIVRRQFLALRKAAIFVQRKY----RATLYAKHK------LHQFLQLRKAAI 2430

  Fly   981 TLEAEFKN--VKAACQDKDK---LIEA--------------------LNKQLEAERDEKMQLLEE 1020
            |:::.|:.  ||...|::.:   ||:|                    :.:.....|..|:|..:.
  Rat  2431 TIQSSFRRLMVKKQLQERHRAAALIQATFRMHRTYVRFHLWKRASIRIQQHYRTYRTRKLQREQL 2495

  Fly  1021 NGHAQEEWISQKQTWRQENE----ELRRQIDEIIDMAKNAEVNQRNQ-------EDRMLAEIDNR 1074
            :.......:..:.|:|...:    :..|...::|.  |....|:|.|       |:..|.::..:
  Rat  2496 SREEHRAAVRIQSTYRMHRQRCVYQQLRWAAKVIQ--KKYRANKRRQDLPMACKEETPLTQMHFQ 2558

  Fly  1075 ELNEAYQRAIK-DKEVIENENFMLKEELSRLTAGSFSLHARKASNA---SSQNEDDVGYASA--- 1132
            ..|.|.|..:: |..||..::|       |.......:.|.:.|.|   :|:...|:....|   
  Rat  2559 GSNMAKQVQLQHDAAVIIQKHF-------RAFKARRLVEAERGSQAVWRTSEARQDLRRGEAACR 2616

  Fly  1133 -----------KNTLDINRPPDLLSKNYSYNDSTSLVVKLR--SILEEEKQKHKVLQE---QYIK 1181
                       :..|.:.:....:...:......:..:|:|  :|:.:.|.:..:...   :.:.
  Rat  2617 IQAWYRRCRVRRRYLTLLKAVKTIQGYFYAKQERTRFLKMRAAAIIIQRKWRAALCARAACESLT 2681

  Fly  1182 LSSRHKPTEDSFRVSELEVENEKLRSEYDQLRTSIKHGVEINE-LNAQHAALQEEVRRRREECIQ 1245
            | .||    .:..|.:......|.|..:.|.|::   .:.|.. :.|..||.||     |.:.:|
  Rat  2682 L-KRH----GAACVIQAHFRGYKGRQSFRQQRSA---ALTIQRYVRASVAARQE-----RTKYVQ 2733

  Fly  1246 LK--AVLLQQSQSMRSLEPESLQMRG----NDVNEL----------------MEAFHSQKLINRQ 1288
            .|  ||:||            ..:||    ..|:|.                |.|...|:...|.
  Rat  2734 FKKSAVVLQ------------ALVRGWLARKRVSEQKANIRRFRFIAAAYCHMCALRIQRAYRRH 2786

  Fly  1289 LESELKAITEEHNSKLVEMTQEIERLNNEK--DELQKVMFESIDEFEDSNVDTLRQNDRYLRREL 1351
            :  .::...:..||.:|.......||..::  ::.:|:|....|      |...|.........:
  Rat  2787 V--AMRNAKKHVNSVIVIQRWFRRRLQQQRFIEQYRKIMAAERD------VQARRHQQDRAASVI 2843

  Fly  1352 QKAVAQFLLVQEELKLANA--------------------KLKAYRQDGGQLEHKIEEEMIRNKSN 1396
            ||||.:|||.:.:.|:.::                    ::||.||....:...:|||   ||  
  Rat  2844 QKAVRRFLLSRRQQKVNSSATRIQALWRGYASRKKNDRTEIKAIRQSLRAVSRNVEEE---NK-- 2903

  Fly  1397 GTSADVGANVTKQKSQNPQGLMKF-HSSDLDKILQRL--LSALTPRTVVGLLPGFPAYLIFMCIR 1458
                     :.::..:....|:.: |.|.:.:.::.|  ::.|:|.....:........:|:.||
  Rat  2904 ---------LYRRTERALHHLLTYKHLSAILEAMKHLEVVTRLSPLCCENMAESGAVSTVFVVIR 2959

  Fly  1459 YTDLTNADDDVRELLSKFVIQIKKMHRT---PHPIENRVIWLVNSITLLNLMKQYGDVDEYVKFN 1520
            ..:.:....:|.....:.::.:.|..:|   .:..||.|      .|||.|::.|          
  Rat  2960 SCNRSVPCMEVVGCAVQVLLNVAKYDKTISAVYDAENCV------DTLLELLQAY---------- 3008

  Fly  1521 TEKQNQQQL-KNFNLF--------------------EYRRVILDLIVNLYQALI----MQIQGLL 1560
            .||...:.. |:.::|                    :.|..::|.|..||:..:    :..|||.
  Rat  3009 REKPGDRVAEKSASIFTRTCCLLAVLLKTEQCAFDAQSRSKVIDRIYRLYKFTVPKHKVNTQGLF 3073

  Fly  1561 D 1561
            |
  Rat  3074 D 3074

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
didumNP_724569.1 MYSc 65..778 CDD:214580 111/695 (16%)
MYSc_Myo5 84..767 CDD:276831 110/684 (16%)
IQ 900..922 CDD:197470 7/21 (33%)
GBP_C <971..1086 CDD:303769 28/154 (18%)
coiled coil 1049..1068 CDD:293879 6/25 (24%)
coiled coil 1077..1086 CDD:293879 3/9 (33%)
JAKMIP_CC3 <1190..1299 CDD:292653 26/131 (20%)
Myo5_CBD 1424..1792 CDD:271254 30/168 (18%)
AspmNP_001099425.2 ASH 29..126 CDD:292408
CH 941..1037 CDD:294029
CH 1095..>1148 CDD:278723
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0160
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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