DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment didum and Myo1f

DIOPT Version :10

Sequence 1:NP_724569.1 Gene:didum / 35680 FlyBaseID:FBgn0261397 Length:1800 Species:Drosophila melanogaster
Sequence 2:NP_444444.2 Gene:Myo1f / 17916 MGIID:107711 Length:1098 Species:Mus musculus


Alignment Length:962 Identity:306/962 - (31%)
Similarity:495/962 - (51%) Gaps:157/962 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 GQNDLTTLSYLHEPGVLHNLRVRFCERQIIYTYCGIILVAINPYAEMPLYGPSIIRAYRGHAMGD 135
            |.:|:..|..:.|..::.|||.||.: ..|:||.|.:|:::||:.:||.:....|..|:|.|..:
Mouse    18 GVDDMVLLPQITEDAIVSNLRKRFMD-DYIFTYIGSVLISVNPFKQMPYFTDREIDLYQGAAQYE 81

  Fly   136 LEPHIFALAEEAYTKLERENCNLSIIVSGESGAGKTVSAKYAMRYFAAV-GGSESETQVERKVLA 199
            ..|||:||.:..|..:..:..|..:|:||||||||||:|||.|.|.:.| ||.:....|:..:|.
Mouse    82 NPPHIYALTDNMYRNMLIDCENQCVIISGESGAGKTVAAKYIMGYISKVSGGGDKVQHVKDIILQ 146

  Fly   200 SSPIMEAFGNAKTTRNDNSSRFGKFTKLLFRNQMGVMFLQGATMHTYLLEKSRVVYQAQGERNYH 264
            |:|::||||||||.||:|||||||:.::.| ::.|..  .|..:..:||||||||.|.:.|||:|
Mouse   147 SNPLLEAFGNAKTVRNNNSSRFGKYFEIQF-SRGGEP--DGGKISNFLLEKSRVVMQNENERNFH 208

  Fly   265 IFYQLC--AARSKYPELVLDHQDKFQFLNMGGAPEIERVSDAEQFNETVQAMTVLGF--SIQQIA 325
            |:|||.  |::.:...|.|...|.:.:||.....::|...|...|:||:.||.|:|.  |:||: 
Mouse   209 IYYQLLEGASQEQQQNLGLMTPDYYYYLNQSDTYKVEGTDDRSDFSETLSAMQVIGIPTSVQQL- 272

  Fly   326 DIVKILAGILHLGNIQVSKKFNEGSEEEDSDSCDIFHNDIHLQITADLLRVSADDLRRWLLMRKI 390
             :::::|||||||||...::.|....|    |.|:      |...|.||.:.:..|:..|..||:
Mouse   273 -VLQLVAGILHLGNISFCEEGNYARVE----SVDL------LAFPAYLLGIDSGRLQEKLTSRKM 326

  Fly   391 ESV----NEYVLIPNSIEAAQAARDALAKHIYAKLFQYIVGVLNKSLNNGSKQCSFIGVLDIYGF 451
            :|.    :|.:.:..::|.|...||||||.:||:||.::|..:|:::....::.| |||||||||
Mouse   327 DSKWGGRSESIDVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQEEYS-IGVLDIYGF 390

  Fly   452 ETFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGITWTMIDFYDNQPCIDLIESRL--- 513
            |.|:.|.|||||||:.||||||.|.:...|.|||||::|||.||.|::::|:...||||::|   
Mouse   391 EIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEYFNNKIVCDLIENKLSPP 455

  Fly   514 GVLDLLDEECRMPK----GSDESWAGKLIGKCNKFPHFEKPRFGTTSFFIKHFSDTVEYDVNGFL 574
            |::.:||:.|....    |:|::...||........||..   .:..|.|.|::..|.|||:||.
Mouse   456 GIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHFNS---WSAGFVIHHYAGKVSYDVSGFC 517

  Fly   575 EKNRDTVSKELTQVLSESNMSLAKQVMTLEEIDTLCVD-SAKSSTLGGRVVISAGRKQQGNDTRR 638
            |:|||.:..:|.:::..|:....:.:..    :.|.:| ..:.||.|.::      |:|.||   
Mouse   518 ERNRDVLFSDLIELMQSSDQDFLRMLFP----EKLNIDKKGRPSTAGSKI------KKQAND--- 569

  Fly   639 RVVPSKQHRKTVGSQFQESLASLISTLHATTPHYVRCIKPNDDKVAFKWETAKIIQQLRACGVLE 703
                                  |:|||...||||:||||||:.|....||.:::..|:...|:.|
Mouse   570 ----------------------LVSTLKKCTPHYIRCIKPNETKRPRDWEESRVKHQVEYLGLRE 612

  Fly   704 TVRISAAGFPSRWLYPDFYMRYQLLVYRS-KLDKNDMKLSCRNIVMKWIQDEDKYRFGNTQIFFR 767
            .:|:..|||..|..:..|..||.:|...: ...:.|.:...::::.....:.|:|:.|:|::|.:
Mouse   613 NIRVRRAGFAYRRQFSKFLQRYAILTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVK 677

  Fly   768 AGQVAF-LEQVRANLRKKYITIVQSVVRRFVYRRQFLRIQKVINGIQKHARGYLARERTQKMREA 831
            ..:..| ||::|.              |:|   ..|.|.      |||..|.::|..:.::|||.
Mouse   678 NPESLFLLEEMRE--------------RKF---DGFART------IQKAWRRHVAVRKYEEMREE 719

  Fly   832 RAGLILSKYARGWLCRRRYLRLRHSISGIQTYARGMLARNKFHAMRDHYRAVQIQRFVRGALARR 896
            .:.::|:|..          |.|:||:           ||                ||...|...
Mouse   720 ASNILLNKKE----------RRRNSIN-----------RN----------------FVGDYLGLE 747

  Fly   897 AYQKRRRNIIICQAAIRRFLARRKFKRMKAEAKTISHMENKYMGLENKIISMQQRIDELNRDNSN 961
            .           :..:|:|||:|  :|:.. |.:::..:.::..::..:|...:.:..:.|:...
Mouse   748 E-----------RPELRQFLAKR--ERVDF-ADSVTKYDRRFKPIKRDLILTPKCVYVIGREKVK 798

  Fly   962 LKHKTSEI-SVLKMKLELKKTLEAEFKNVKAACQDKDKLI---EALNKQLEA 1009
            ...:...: .|||.||:::     ..:.|..:.:..|..|   ||.:..||:
Mouse   799 RGPEKGLVREVLKKKLDIQ-----ALRGVSLSTRQDDFFILQEEAADSFLES 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
didumNP_724569.1 MYSc_Myo5 84..767 CDD:276831 254/700 (36%)
IQ 900..922 CDD:197470 5/21 (24%)
SMC_prok_B <942..1365 CDD:274008 14/72 (19%)
Myo5_CBD 1424..1792 CDD:271254
Myo1fNP_444444.2 MYSc_Myo1 31..677 CDD:276829 254/700 (36%)
Myosin_TH1 717..915 CDD:461801 34/185 (18%)
PHA03247 <920..1043 CDD:223021
SH3_MyoIe_If_like 1045..1097 CDD:212761
Blue background indicates that the domain is not in the aligned region.

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