DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment didum and myo1d

DIOPT Version :9

Sequence 1:NP_724569.1 Gene:didum / 35680 FlyBaseID:FBgn0261397 Length:1800 Species:Drosophila melanogaster
Sequence 2:XP_002935562.1 Gene:myo1d / 100497691 XenbaseID:XB-GENE-5877220 Length:1007 Species:Xenopus tropicalis


Alignment Length:1199 Identity:336/1199 - (28%)
Similarity:544/1199 - (45%) Gaps:280/1199 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 GQNDLTTLSYLHEPGVLHNLRVRFCERQIIYTYCGIILVAINPYAEMPLYGPSIIRAYRGHAMGD 135
            |:.|...:..:..|..:.||::|| |:..|||:.|.::|::|||..:|:||...|..|:|..:.:
 Frog    10 GKADFVLMDSVTLPEFMENLKLRF-EKGRIYTFIGEVVVSVNPYKNLPIYGRDTIEQYKGRELYE 73

  Fly   136 LEPHIFALAEEAYTKLERENCNLSIIVSGESGAGKTVSAKYAMRYFAAVGGSESETQVER---KV 197
            ..||:|::|:.||..::|...:..|::|||||||||.::||.|:|.||:.......:|||   .:
 Frog    74 RPPHLFSIADAAYKAMKRRCKDTCIVISGESGAGKTEASKYIMQYIAAITNPSQRAEVERVKNML 138

  Fly   198 LASSPIMEAFGNAKTTRNDNSSRFGKFTKLLFRNQMGVMFLQGATMHTYLLEKSRVVYQAQGERN 262
            |.|:.::||||||||.||||||||||:..:.|..:...:   |..:..||||||||:.|..||||
 Frog   139 LKSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPI---GGHISNYLLEKSRVIVQQLGERN 200

  Fly   263 YHIFYQLCAARSKYPELVLD----HQDKFQFLNMGGAPEIERV-SDAEQFNETVQAMTVLGFSIQ 322
            :|.|||:....   ||..|.    .:|...:.......:::.. :|...|.:..:||.|:||..:
 Frog   201 FHSFYQMILGA---PEQTLRSLHLQKDISLYAYTRSLAQLKSSNNDTGDFKDVAEAMKVIGFKPE 262

  Fly   323 QIADIVKILAGILHLGNIQVSKKFNEGSEEEDSDSCDIFHNDIHLQITADLLRVSADDLRRWLLM 387
            :|..:.||||.||||||:    ||     ..|.|: .:..|...:.:.||||...::.:.:.||.
 Frog   263 EIQTVYKILAAILHLGNL----KF-----VLDGDT-TLIENGKVISVVADLLGTRSEQVEKALLF 317

  Fly   388 RKIESVNEYVLIPNSIEAAQAARDALAKHIYAKLFQYIVGVLNKSLNNGSKQCSF------IGVL 446
            |.:.:..:.:...::.:.|...|||.||.||.:||.:||..:|..::...:..:.      ||||
 Frog   318 RTVATGRDVIDKQHTEKEANYGRDAFAKAIYERLFCWIVNRINDVIDVKQQDAALHGKNTVIGVL 382

  Fly   447 DIYGFETFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGITWTMIDFYDNQPCIDLIES 511
            ||||||.|:.||||||||||.||||||.|.|.|...||.||.:|||.|..||::|||..:||:|.
 Frog   383 DIYGFEIFDNNSFEQFCINYCNEKLQQLFIQLVLTQEQAEYQREGIPWKHIDYFDNQIIVDLVEQ 447

  Fly   512 R-LGVLDLLDEEC-RMPKGSDESWAGKLIGKCNKFPHFEKPRFGTT--------SFFIKHFSDTV 566
            : .|::.|||:.| .:.|.:|..:...|..:..|..|:...:...|        .|.|:|::..|
 Frog   448 QHRGIIALLDDACMNVGKVTDNMFLEALDKQLGKHAHYSSRKVCATDKALEYNRDFRIRHYAGDV 512

  Fly   567 EYDVNGFLEKNRDTVSKELTQVLSESNMSLAKQV-----MTLEEIDTLCVDSAKSSTLGGRVVIS 626
            .|.|.||::||:||:.::..:::..|:.::.|.:     :::.|:                    
 Frog   513 VYSVVGFIDKNKDTLFQDFKRLMFNSSNAVLKAMWPEGKLSITEV-------------------- 557

  Fly   627 AGRKQQGNDTRRRVVPSKQHRKTVGSQFQESLASLISTLHATTPHYVRCIKPNDDKVAFKWETAK 691
                     |:|.:        |..:.|:.|:.:|:..|.:..|:||||||||:.|....::..:
 Frog   558 ---------TKRPL--------TAATLFKNSMIALVDNLASKEPYYVRCIKPNEKKSPALFDEVR 605

  Fly   692 IIQQLRACGVLETVRISAAGFPSRWLYPDFYMRYQLLVYRSKLD-KNDMKLSCRNIVMKWIQD-- 753
            ...|:...|:||.||:..|||..|.:|..|..||:|:   |.|. .|....|.|..|.:::.|  
 Frog   606 CKHQVEYLGLLENVRVRRAGFAYRQVYEKFLHRYKLI---SSLTWPNHSLPSDRIAVERFMVDCG 667

  Fly   754 -EDKYRFGNTQIFFRAGQ-VAFLEQVRANLRKKYITIVQSVVRRFVYRRQFLRIQKVINGIQKHA 816
             .....:|.|:||.|..: :.|||:.|:.:                       :.::|..:||..
 Frog   668 LNHDAAYGKTKIFIRTPRTLFFLEERRSEM-----------------------LIRIILFLQKLW 709

  Fly   817 RGYLARERTQKMREARAGLILSKYARGWLCRRRYLR-LRHSISGIQTYARGMLARNKFHAMRDHY 880
            ||.|||.|.:::   ||||.:.:|.|.:.. :.||| :.|..:|::.             .||:.
 Frog   710 RGTLARRRCKRI---RAGLTILRYYRRYKV-KSYLREVMHRFNGVKN-------------SRDYG 757

  Fly   881 RAVQIQRFVRGALARRAYQKRRRNIIICQAAIRRFLARRKFKRMKAEAKTISHMENKYMGLENKI 945
            :.|:.....:                    .:|||            .:.:.|:.|::.|     
 Frog   758 KHVKWPTPPK--------------------VLRRF------------QEALQHIYNRWRG----- 785

  Fly   946 ISMQQRIDELNRDNSNLKHKTSEISVLKMKLELKKTLEAEFKNVKA--------ACQDKDKLIEA 1002
               .|.|..|         ..:||..::.|:       |.|:|:|.        .|.:...|  |
 Frog   786 ---YQIIRSL---------PPAEIPKVRAKV-------AAFENLKGHRVDMGLQRCWEGSYL--A 829

  Fly  1003 LNKQLEAERDEKMQLLEENGHAQEEWISQKQTWRQENEELRRQIDEIIDMAKNAEVNQRNQEDRM 1067
            ||              :|||...:.::|:       :.||:|: |:.:....:..|.:.|:    
 Frog   830 LN--------------QENGRDSDLFVSR-------SSELQRK-DKFMQALFSCHVRKVNR---- 868

  Fly  1068 LAEIDNRELNEAYQRAIKDKEVIENENFMLKEELSRLTAGSFSLHARKASNASS-QNEDDVGYAS 1131
                    .|:...|||          |:....|.::..|.    |.|...::. .|...:...|
 Frog   869 --------FNKVEDRAI----------FITDRHLYKMDPGK----AYKVMTSTPLYNVSGISVTS 911

  Fly  1132 AKNTLDINRPPDLLSKNYSYNDSTSLVVKLRSILEEEKQKHKVLQEQYIKLSSRHKPTEDSFRVS 1196
            .|:.|.:          :...|:..|:|.|.                    .|...|.|.  |:.
 Frog   912 GKDQLVV----------FHTKDNKDLIVCLG--------------------CSGQPPCES--RIG 944

  Fly  1197 EL-EVENEKLRSEYDQLRTSIKHGVEINE 1224
            || .|.....:||...|:.::.|.::..:
 Frog   945 ELVGVLANHFKSERRPLQVTVSHPIQCRQ 973

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
didumNP_724569.1 MYSc 65..778 CDD:214580 253/740 (34%)
MYSc_Myo5 84..767 CDD:276831 247/715 (35%)
IQ 900..922 CDD:197470 3/21 (14%)
GBP_C <971..1086 CDD:303769 24/122 (20%)
coiled coil 1049..1068 CDD:293879 2/18 (11%)
coiled coil 1077..1086 CDD:293879 4/8 (50%)
JAKMIP_CC3 <1190..1299 CDD:292653 9/36 (25%)
Myo5_CBD 1424..1792 CDD:271254
myo1dXP_002935562.1 MYSc_Myo1 24..682 CDD:276829 246/714 (34%)
Myosin_TH1 803..1004 CDD:368706 48/260 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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