DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment didum and myo1f

DIOPT Version :10

Sequence 1:NP_724569.1 Gene:didum / 35680 FlyBaseID:FBgn0261397 Length:1800 Species:Drosophila melanogaster
Sequence 2:XP_002938604.1 Gene:myo1f / 100493342 XenbaseID:XB-GENE-5909751 Length:1095 Species:Xenopus tropicalis


Alignment Length:954 Identity:303/954 - (31%)
Similarity:494/954 - (51%) Gaps:128/954 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 GQNDLTTLSYLHEPGVLHNLRVRFCERQIIYTYCGIILVAINPYAEMPLYGPSIIRAYRGHAMGD 135
            |.:|:..||.:.|..::.||:.|:.: ..|:||.|.:|:::||:.:||.:....|..|:|.|..:
 Frog    18 GVDDMVLLSKITEDAIVENLKKRYLD-DYIFTYIGSVLISVNPFKQMPYFTEREIELYQGAAQYE 81

  Fly   136 LEPHIFALAEEAYTKLERENCNLSIIVSGESGAGKTVSAKYAMRYFAAVGGSESETQ-VERKVLA 199
            ..|||:||.:..|..:..:..|..:|:||||||||||:|||.|.|.:.|.|..|:.| |:..:|.
 Frog    82 NPPHIYALTDNMYRNMLIDGENQCVIISGESGAGKTVAAKYIMGYISKVSGGGSKVQHVKDIILQ 146

  Fly   200 SSPIMEAFGNAKTTRNDNSSRFGKFTKLLFRNQMGVMFLQGATMHTYLLEKSRVVYQAQGERNYH 264
            |:|::||||||||.||:|||||||:.::.| ::.|..  .|..:..:||||||||.|.:.|||:|
 Frog   147 SNPLLEAFGNAKTVRNNNSSRFGKYFEIQF-SRGGEP--DGGKISNFLLEKSRVVSQNENERNFH 208

  Fly   265 IFYQLC--AARSKYPELVLDHQDKFQFLNMGGAPEIERVSDAEQFNETVQAMTVLGFSIQQIADI 327
            :||||.  |:..:...|.:...|.|.:||.....::|..:|.:.|.|.::||.|:|.|.::...:
 Frog   209 VFYQLIEGASDEQRQNLGIMTPDYFFYLNQSETYKVEGTNDKKDFYEMLEAMMVIGVSAEEQQMV 273

  Fly   328 VKILAGILHLGNIQVSKKFNEGSEEEDSDSCDIFHNDIHLQITADLLRVSADDLRRWLLMRKIES 392
            ::|.|||||||||...::.|....|     |.    |: |...|.||.|....|...|..||::|
 Frog   274 LQISAGILHLGNISFQEQGNYAKVE-----CP----DL-LDFPAYLLGVQKGRLNDKLTSRKMDS 328

  Fly   393 V----NEYVLIPNSIEAAQAARDALAKHIYAKLFQYIVGVLNKSLNNGSKQCSFIGVLDIYGFET 453
            .    :|.:.:..::|.|...||||:|.:||::|.::|..:||::....::.| ||||||||||.
 Frog   329 KWGGRSESITVTLNVEQASYTRDALSKALYARVFDFLVESINKAMQKPYEEYS-IGVLDIYGFEI 392

  Fly   454 FEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGITWTMIDFYDNQPCIDLIESRL---GV 515
            |:.|.|||||||:.||||||.|.:...|.|||||:.|||.||.|::::|:...||||::|   |:
 Frog   393 FQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVAEGIRWTPIEYFNNKIVCDLIENKLNPPGI 457

  Fly   516 LDLLDEECRMPK----GSDESWAGKLIGKCNKFPHFEKPRFGTTSFFIKHFSDTVEYDVNGFLEK 576
            :.:||:.|....    |:|::...||........||.....|   |.|.|::..|.|.|.||.|:
 Frog   458 MSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHFSNWNLG---FVIHHYAGKVSYYVEGFCER 519

  Fly   577 NRDTVSKELTQVLSESNMSLAKQVMTLEEIDTLCVDSAKSSTLGGRVVISAGRKQQGNDTRRRVV 641
            |||.:..:|.:::..|.....:.:.. |.:|:  ...::.:|.|.::      |:|.||      
 Frog   520 NRDVLFIDLIELMQSSEYQFIQSLFP-ERLDS--DKKSRPTTAGSKI------KKQAND------ 569

  Fly   642 PSKQHRKTVGSQFQESLASLISTLHATTPHYVRCIKPNDDKVAFKWETAKIIQQLRACGVLETVR 706
                               |::||...||||:||||||:.|....||.:::..|:...|:.|.:|
 Frog   570 -------------------LVNTLMKCTPHYIRCIKPNETKKPKDWEESRVKHQVEYLGLKENIR 615

  Fly   707 ISAAGFPSRWLYPDFYMRYQLLVYRS-KLDKNDMKLSCRNIVMKWIQDEDKYRFGNTQIFFRAGQ 770
            :..|||..|.::..|..||.:|...: ...:.|.:...::::.....|.|:|:.|.:::|.:..:
 Frog   616 VRRAGFAYRRVFNKFLQRYAILTQETWPRWRGDERQGVQHLLRSVNMDSDQYQMGKSKVFVKNPE 680

  Fly   771 VAF-LEQVRANLRKKYITIVQSVVRRFVYRRQFLRIQKVINGIQKHARGYLARERTQKMREARAG 834
            ..| ||::|   .:|:.|..::                    |||..|.|:||.:.::|||..:.
 Frog   681 SLFLLEEMR---ERKFDTFART--------------------IQKAWRRYIARRKYEQMREEASN 722

  Fly   835 LILSKYARGWLCRRRYLRLRHSISGIQTYARGMLAR---NKFHAMRDHYR-AVQIQRFVRGALAR 895
            ::.     |:..|||....|:.:...    .||..|   .:|...|:... |..:.::      .
 Frog   723 ILY-----GYKERRRNSINRNFVGDY----LGMEDRPELRQFMTKRERIDFADSVSKY------D 772

  Fly   896 RAYQKRRRNIIICQAAIRRFLARRKFKR--MKAEAKTISHMENKYMGLENKIISMQQR----IDE 954
            |.::..:|::|:....: ..:.|.|.|:  .|.:.|.|...:.:.|.:::..:|.:|.    :.|
 Frog   773 RRFKSIKRDLILSPKYL-YLIGREKVKKGPEKGQIKEILKKKVEIMNIQSISLSTRQDDFFILQE 836

  Fly   955 LNRDN-----------SNLKHKTSEISVLKMKLELKKTLEAEFK 987
            ::.|.           |.:..:..||:..|::|....||:...|
 Frog   837 VDHDTLMESVFKTEFISLMCKRYEEITSRKLRLNFTDTLQLRVK 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
didumNP_724569.1 MYSc_Myo5 84..767 CDD:276831 249/697 (36%)
IQ 900..922 CDD:197470 4/21 (19%)
SMC_prok_B <942..1365 CDD:274008 12/61 (20%)
Myo5_CBD 1424..1792 CDD:271254
myo1fXP_002938604.1 MYSc_Myo1 31..677 CDD:276829 249/697 (36%)
Myosin_TH1 717..915 CDD:461801 35/180 (19%)
PHA03378 <958..>1041 CDD:223065
SH3_MyoIe_If_like 1042..1094 CDD:212761
Blue background indicates that the domain is not in the aligned region.

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